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Elmsan1 ELM2 and Myb/SANT-like domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 238317, updated on 12-Aug-2019

Summary

Official Symbol
Elmsan1provided by MGI
Official Full Name
ELM2 and Myb/SANT-like domain containing 1provided by MGI
Primary source
MGI:MGI:2685106
See related
Ensembl:ENSMUSG00000042507
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm260; 9430029N19Rik; C130039O16Rik
Expression
Ubiquitous expression in spleen adult (RPKM 12.5), lung adult (RPKM 10.7) and 27 other tissues See more
Orthologs

Genomic context

See Elmsan1 in Genome Data Viewer
Location:
12; 12 D1
Exon count:
16
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (84149168..84218881, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (85490118..85559831, complement)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene dynein, axonemal, light chain 1 Neighboring gene paraneoplastic antigen MA1 Neighboring gene predicted gene, 40476 Neighboring gene VISTA enhancer mm529 Neighboring gene predicted gene, 40475 Neighboring gene predicted gene, 31513 Neighboring gene uncharacterized LOC115487944 Neighboring gene predicted gene, 46319 Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit pseudogene Neighboring gene prostaglandin reductase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulatory region DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
histone deacetylase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ELM2 and SANT domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163501.1NP_001156973.1  ELM2 and SANT domain-containing protein 1

    See identical proteins and their annotated locations for NP_001156973.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant differs in the 5' UTR, compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC125071, AC159649
    Consensus CDS
    CCDS49109.1
    UniProtKB/TrEMBL
    E9Q2I4
    Related
    ENSMUSP00000048120.6, ENSMUST00000046266.12
    Conserved Domains (3) summary
    smart00717
    Location:825868
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:715770
    ELM2; ELM2 domain
    cl21498
    Location:824868
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  2. NM_001163502.1NP_001156974.1  ELM2 and SANT domain-containing protein 1

    See identical proteins and their annotated locations for NP_001156974.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC125071
    Consensus CDS
    CCDS49109.1
    UniProtKB/TrEMBL
    E9Q2I4
    Related
    ENSMUSP00000105923.1, ENSMUST00000110294.1
    Conserved Domains (3) summary
    smart00717
    Location:825868
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:715770
    ELM2; ELM2 domain
    cl21498
    Location:824868
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p6 C57BL/6J

    Range
    84149168..84218881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246705.1XP_030102565.1  ELM2 and SANT domain-containing protein 1 isoform X1

  2. XM_006515843.4XP_006515906.1  ELM2 and SANT domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006515906.1

    UniProtKB/TrEMBL
    E9Q2I4
    Conserved Domains (3) summary
    smart00717
    Location:825868
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:715770
    ELM2; ELM2 domain
    cl21498
    Location:824868
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
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