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Rbm41 RNA binding motif protein 41 [ Mus musculus (house mouse) ]

Gene ID: 237073, updated on 10-Oct-2019

Summary

Official Symbol
Rbm41provided by MGI
Official Full Name
RNA binding motif protein 41provided by MGI
Primary source
MGI:MGI:2444923
See related
Ensembl:ENSMUSG00000031433
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BB131279; D330023I21Rik
Expression
Broad expression in CNS E18 (RPKM 2.0), CNS E11.5 (RPKM 1.9) and 21 other tissues See more
Orthologs

Genomic context

See Rbm41 in Genome Data Viewer
Location:
X; X F1
Exon count:
12
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (139889511..139998595, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (136424050..136533134, complement)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene claudin 2 Neighboring gene microrchidia 4 Neighboring gene predicted gene, 52431 Neighboring gene NMD3 homolog pseudogene Neighboring gene nucleoporin 62 C-terminal like Neighboring gene PIH1 domain containing 3B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC47195

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172147.1NP_001165618.1  RNA-binding protein 41 isoform 1

    See identical proteins and their annotated locations for NP_001165618.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
    Source sequence(s)
    AK164496, AL672270, BC037024, BY125116
    Consensus CDS
    CCDS53204.1
    UniProtKB/Swiss-Prot
    Q8JZV4
    Related
    ENSMUSP00000108631.1, ENSMUST00000113007.7
    Conserved Domains (2) summary
    COG0724
    Location:312403
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:320397
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  2. NM_001172148.1NP_001165619.1  RNA-binding protein 41 isoform 3

    See identical proteins and their annotated locations for NP_001165619.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon, uses an upstream start codon, and has a distinct terminal exon, compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus and a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK166005, BY125116
    Consensus CDS
    CCDS53205.1
    UniProtKB/Swiss-Prot
    Q8JZV4
    Related
    ENSMUSP00000084662.5, ENSMUST00000087400.11
    Conserved Domains (2) summary
    COG0724
    Location:300361
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:308362
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. NM_001290630.1NP_001277559.1  RNA-binding protein 41 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate exon and contains an alternate exon, and uses an upstream start codon, compared to variant 1. The resulting isoform (4) has a distinct N-terminus and is longer than isoform 1.
    Source sequence(s)
    AK084514, AK141075, AL672270, BY125116
    Consensus CDS
    CCDS72439.1
    UniProtKB/Swiss-Prot
    Q8JZV4
    UniProtKB/TrEMBL
    A2AG09
    Related
    ENSMUSP00000108634.2, ENSMUST00000113011.8
    Conserved Domains (2) summary
    COG0724
    Location:324415
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:332409
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  4. NM_153586.2NP_705814.1  RNA-binding protein 41 isoform 2

    See identical proteins and their annotated locations for NP_705814.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon and uses an upstream start codon, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AL672270, BC037024, BY125116
    Consensus CDS
    CCDS41147.1
    UniProtKB/Swiss-Prot
    Q8JZV4
    Related
    ENSMUSP00000033810.7, ENSMUST00000033810.7
    Conserved Domains (2) summary
    COG0724
    Location:300391
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:308385
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p6 C57BL/6J

    Range
    139889511..139998595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251329.1XP_030107189.1  RNA-binding protein 41 isoform X3

  2. XM_011247736.3XP_011246038.1  RNA-binding protein 41 isoform X1

    Conserved Domains (2) summary
    COG0724
    Location:331422
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12239
    Location:339416
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  3. XM_030251328.1XP_030107188.1  RNA-binding protein 41 isoform X2

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