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Lancl3 LanC lantibiotic synthetase component C-like 3 (bacterial) [ Mus musculus (house mouse) ]

Gene ID: 236285, updated on 27-Nov-2024

Summary

Official Symbol
Lancl3provided by MGI
Official Full Name
LanC lantibiotic synthetase component C-like 3 (bacterial)provided by MGI
Primary source
MGI:MGI:2443335
See related
Ensembl:ENSMUSG00000047344 AllianceGenome:MGI:2443335
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6030463G20Rik
Summary
Predicted to be involved in carbohydrate metabolic process and peptide modification. Predicted to be active in plasma membrane. Orthologous to human LANCL3 (LanC like family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in cerebellum adult (RPKM 1.8), adrenal adult (RPKM 1.8) and 23 other tissues See more
Orthologs
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Genomic context

See Lancl3 in Genome Data Viewer
Location:
X A1.1; X 4.18 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (9066212..9134324)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (9199973..9268085)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930402K13 gene Neighboring gene ferritin, heavy polypeptide-like 17, pseudogene 3 Neighboring gene STARR-seq mESC enhancer starr_46705 Neighboring gene STARR-seq mESC enhancer starr_46706 Neighboring gene predicted gene 14862 Neighboring gene H2A histone family member L1M Neighboring gene X-linked Kx blood group Neighboring gene predicted gene, 25481

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in peptide modification IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173414.3NP_775590.2  lanC-like protein 3

    See identical proteins and their annotated locations for NP_775590.2

    Status: VALIDATED

    Source sequence(s)
    AK031623, AK043841
    Consensus CDS
    CCDS30007.1
    UniProtKB/Swiss-Prot
    A2AFA5, Q14BF1, Q8BRA2, Q8BRN8, Q8CD19
    Related
    ENSMUSP00000064516.3, ENSMUST00000069763.3
    Conserved Domains (1) summary
    cd04794
    Location:65414
    euk_LANCL; Eukaryotic Lanthionine synthetase C-like protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    9066212..9134324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)