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UMAG_11989 putative RNA-dependent ATPase [ Ustilago maydis 521 ]

Gene ID: 23567787, updated on 30-Nov-2023

Summary

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Gene symbol
UMAG_11989
Gene description
putative RNA-dependent ATPase
Locus tag
UMAG_11989
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ustilago maydis 521 (strain: 521, culture-collection: FGSC:9021)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago
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Genomic context

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Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_026490.1 (100843..103593, complement)

Chromosome 13 - NC_026490.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026490.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Kämper J, et al. Nature, 2006 Nov 2. PMID 17080091

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative RNA-dependent ATPase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_026490.1 Reference assembly

    Range
    100843..103593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011392713.1 → XP_011391015.1  putative RNA-dependent ATPase [Ustilago maydis 521]

    See identical proteins and their annotated locations for XP_011391015.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0A0D1DY19, Q4P5U4
    Conserved Domains (4) summary
    COG0513
    Location:58 → 552
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:278 → 408
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:60 → 264
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:441 → 500
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
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