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SCRIB scribble planar cell polarity protein [ Homo sapiens (human) ]

Gene ID: 23513, updated on 16-Feb-2020

Summary

Official Symbol
SCRIBprovided by HGNC
Official Full Name
scribble planar cell polarity proteinprovided by HGNC
Primary source
HGNC:HGNC:30377
See related
Ensembl:ENSG00000180900 MIM:607733
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CRIB1; SCRB1; SCRIB1; Vartul
Summary
This gene encodes a protein that was identified as being similar to the Drosophila scribble protein. The mammalian protein is involved in tumor suppression pathways. As a scaffold protein involved in cell polarization processes, this protein binds to many other proteins. The encoded protein binds to papillomavirus E6 protein via its PDZ domain and the C-terminus of E6. Two alternatively spliced transcript variants that encode different protein isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
Expression
Ubiquitous expression in colon (RPKM 9.3), skin (RPKM 9.0) and 25 other tissues See more
Orthologs

Genomic context

See SCRIB in Genome Data Viewer
Location:
8q24.3
Exon count:
37
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (143790925..143815773, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (144873090..144897890, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene chromosome 12 open reading frame 49 pseudogene Neighboring gene IQ motif and ankyrin repeat containing 1 Neighboring gene microRNA 937 Neighboring gene poly(U) binding splicing factor 60 Neighboring gene uncharacterized LOC107986985 Neighboring gene nuclear receptor binding protein 2 Neighboring gene microRNA 6845

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cadherin binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
activation of GTPase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
apoptotic process involved in morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
astrocyte cell migration IEA
Inferred from Electronic Annotation
more info
 
auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 
cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell proliferation IDA
Inferred from Direct Assay
more info
PubMed 
cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell adhesion IGI
Inferred from Genetic Interaction
more info
PubMed 
cochlear nucleus development IEA
Inferred from Electronic Annotation
more info
 
establishment of apical/basal cell polarity IMP
Inferred from Mutant Phenotype
more info
PubMed 
establishment or maintenance of epithelial cell apical/basal polarity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mammary gland duct morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of mitotic cell cycle IDA
Inferred from Direct Assay
more info
PubMed 
neural tube closure IMP
Inferred from Mutant Phenotype
more info
PubMed 
neurotransmitter receptor transport postsynaptic membrane to endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neurotransmitter receptor transport, endosome to postsynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive chemotaxis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of receptor recycling IMP
Inferred from Mutant Phenotype
more info
PubMed 
post-anal tail morphogenesis IEA
Inferred from Electronic Annotation
more info
 
protein localization to adherens junction IMP
Inferred from Mutant Phenotype
more info
PubMed 
receptor clustering IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
receptor localization to synapse IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of postsynaptic neurotransmitter receptor internalization IEA
Inferred from Electronic Annotation
more info
 
suppression by virus of host STAT1 activity IEA
Inferred from Electronic Annotation
more info
 
suppression by virus of host STAT2 activity IEA
Inferred from Electronic Annotation
more info
 
suppression by virus of host type I interferon-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 
synaptic vesicle targeting IEA
Inferred from Electronic Annotation
more info
 
wound healing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Scrib-APC-beta-catenin complex IDA
Inferred from Direct Assay
more info
PubMed 
basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell junction IDA
Inferred from Direct Assay
more info
 
colocalizes_with cell leading edge IDA
Inferred from Direct Assay
more info
PubMed 
cell-cell adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell adherens junction IDA
Inferred from Direct Assay
more info
PubMed 
cell-cell contact zone IEA
Inferred from Electronic Annotation
more info
 
cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell junction IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome HDA PubMed 
extrinsic component of postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 
glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with ionotropic glutamate receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lamellipodium IEA
Inferred from Electronic Annotation
more info
 
myelin sheath abaxonal region IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
postsynaptic density IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
colocalizes_with postsynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
colocalizes_with postsynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with presynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
synapse IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protein scribble homolog
Names
scribbled homolog
scribbled planar cell polarity protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030583.1 RefSeqGene

    Range
    5001..29460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_015356.5NP_056171.3  protein scribble homolog isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    AC105219, KF458881
    Consensus CDS
    CCDS6411.1
    UniProtKB/Swiss-Prot
    Q14160
    UniProtKB/TrEMBL
    A0A0G2JNZ2
    Related
    ENSP00000322938.3, ENST00000320476.7
    Conserved Domains (5) summary
    smart00228
    Location:725813
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    COG4886
    Location:39401
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:12232
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00992
    Location:10021090
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:1437
    LRR_RI; leucine-rich repeat [structural motif]
  2. NM_182706.5NP_874365.3  protein scribble homolog isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC105219, KF458881
    Consensus CDS
    CCDS6412.1
    UniProtKB/Swiss-Prot
    Q14160
    UniProtKB/TrEMBL
    A0A0G2JPP5, A0PJK8
    Related
    ENSP00000349486.2, ENST00000356994.7
    Conserved Domains (6) summary
    smart00228
    Location:725813
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    COG4886
    Location:39401
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:12232
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00992
    Location:10021090
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:1437
    LRR_RI; leucine-rich repeat [structural motif]
    pfam16182
    Location:15551593
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    143790925..143815773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187571.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    267972..292820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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