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Colgalt1 collagen beta(1-O)galactosyltransferase 1 [ Mus musculus (house mouse) ]

Gene ID: 234407, updated on 16-Oct-2021

Summary

Official Symbol
Colgalt1provided by MGI
Official Full Name
collagen beta(1-O)galactosyltransferase 1provided by MGI
Primary source
MGI:MGI:1924348
See related
Ensembl:ENSMUSG00000034807
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Glt25d1; 2810024B22Rik
Expression
Ubiquitous expression in ovary adult (RPKM 112.6), limb E14.5 (RPKM 81.4) and 28 other tissues See more
Orthologs
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Genomic context

See Colgalt1 in Genome Data Viewer
Location:
8; 8 B3.3
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (72063631..72077555)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71610042..71624911)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (74134923..74148810)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene 6-phosphogluconolactonase Neighboring gene niban apoptosis regulator 3 Neighboring gene unc-13 homolog A Neighboring gene predicted gene, 39195 Neighboring gene microRNA 6769b Neighboring gene Janus kinase 3 Neighboring gene insulin-like 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC38524

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables procollagen galactosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables procollagen galactosyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in positive regulation of collagen fibril organization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum lumen ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
procollagen galactosyltransferase 1
Names
glycosyltransferase 25 domain containing 1
glycosyltransferase 25 family member 1
hydroxylysine galactosyltransferase 1
NP_001351372.1
NP_666323.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001364443.1NP_001351372.1  procollagen galactosyltransferase 1 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AK029433, BM944342
    Related
    ENSMUST00000212216.2
    Conserved Domains (2) summary
    cl01298
    Location:335451
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:56170
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  2. NM_146211.3NP_666323.2  procollagen galactosyltransferase 1 isoform 1 precursor

    See identical proteins and their annotated locations for NP_666323.2

    Status: VALIDATED

    Source sequence(s)
    AK036165, BC056951, BE692044
    Consensus CDS
    CCDS22401.1
    UniProtKB/Swiss-Prot
    Q8K297
    Related
    ENSMUSP00000047923.9, ENSMUST00000047903.10
    Conserved Domains (2) summary
    cl01298
    Location:335520
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:56170
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    72063631..72077555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004934818.1 RNA Sequence

  2. XR_004934817.1 RNA Sequence

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