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Cfap119 cilia and flagella associated protein 119 [ Mus musculus (house mouse) ]

Gene ID: 233899, updated on 17-Jan-2023

Summary

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Official Symbol
Cfap119provided by MGI
Official Full Name
cilia and flagella associated protein 119provided by MGI
Primary source
MGI:MGI:2685012
See related
Ensembl:ENSMUSG00000057176 AllianceGenome:MGI:2685012
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm166; Ccdc189
Summary
Is expressed in Meckel's cartilage and skeleton. Orthologous to human CFAP119 (cilia and flagella associated protein 119). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 271.5) and thymus adult (RPKM 11.1) See more
Orthologs
human all
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Genomic context

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See Cfap119 in Genome Data Viewer
Location:
7; 7 F3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127181555..127187819, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127582383..127588666, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Snf2-related CREBBP activator protein Neighboring gene small nucleolar RNA, H/ACA box 30 Neighboring gene transmembrane protein 265 Neighboring gene phosphorylase kinase, gamma 2 (testis) Neighboring gene ring finger protein 40 Neighboring gene RIKEN cDNA 1700120K04 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of transcripts with enriched expression in the developing and adult pancreas. Hoffman BG, et al. Genome Biol, 2008. PMID 18554416, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in acrosomal vesicle ISO
Inferred from Sequence Orthology
more info
  
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
located_in sperm principal piece ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
cilia- and flagella-associated protein 119; coiled-coil domain-containing protein 189
Names
coiled-coil domain containing 189

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033040.4 → NP_001028212.1  cilia- and flagella-associated protein 119 isoform 1

    See identical proteins and their annotated locations for NP_001028212.1

    Status: VALIDATED

    Source sequence(s)
    AC122417
    Consensus CDS
    CCDS21870.1
    UniProtKB/Swiss-Prot
    Q3UST8, Q6NZQ0
    Related
    ENSMUSP00000072019.4, ENSMUST00000072155.5
    Conserved Domains (1) summary
    pfam14769
    Location:130 → 224
    CLAMP; Flagellar C1a complex subunit C1a-32

  2. NM_001382406.1 → NP_001369335.1  cilia- and flagella-associated protein 119 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122417
    Conserved Domains (1) summary
    pfam14769
    Location:130 → 184
    CLAMP; Flagellar C1a complex subunit C1a-32

  3. NM_001382407.1 → NP_001369336.1  cilia- and flagella-associated protein 119 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC122417
    Conserved Domains (1) summary
    pfam14769
    Location:130 → 184
    CLAMP; Flagellar C1a complex subunit C1a-32

RNA

  1. NR_175799.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122417

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    127181555..127187819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006507745.5 → XP_006507808.1  coiled-coil domain-containing protein 189 isoform X1

    Conserved Domains (1) summary
    pfam14769
    Location:130 → 288
    CLAMP; Flagellar C1a complex subunit C1a-32

RNA

  1. XR_003946468.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NZQ0.2 GenPept UniProtKB/Swiss-Prot:Q6NZQ0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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