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KHNYN KH and NYN domain containing [ Homo sapiens (human) ]

Gene ID: 23351, updated on 8-Aug-2021

Summary

Official Symbol
KHNYNprovided by HGNC
Official Full Name
KH and NYN domain containingprovided by HGNC
Primary source
HGNC:HGNC:20166
See related
Ensembl:ENSG00000100441
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA0323
Summary
This gene encodes a protein containing a ribonuclease NYN domain. The function of this protein has yet to be determined. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]
Expression
Ubiquitous expression in stomach (RPKM 18.8), small intestine (RPKM 18.4) and 25 other tissues See more
Orthologs
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Genomic context

See KHNYN in Genome Data Viewer
Location:
14q12
Exon count:
12
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (24423186..24441843)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (24898492..24911049)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene nuclear factor of activated T cells 4 Neighboring gene NYN domain and retroviral integrase containing Neighboring gene cerebellin 3 precursor Neighboring gene uncharacterized LOC101927045 Neighboring gene short chain dehydrogenase/reductase family 39U member 1 Neighboring gene chymase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Biological, clinical and population relevance of 95 loci for blood lipids.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0323

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables endoribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables molecular_function ND
No biological Data available
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in RNA phosphodiester bond hydrolysis, endonucleolytic IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in cytoplasmic ribonucleoprotein granule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034018.1 RefSeqGene

    Range
    5001..17057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001290256.2NP_001277185.1  protein KHNYN isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded protein (isoform 2) has a longer N-terminus, compared to isoform 1.
    Source sequence(s)
    AA493312, AB002321, AL132800, BX161465
    UniProtKB/Swiss-Prot
    O15037
    Conserved Domains (1) summary
    pfam11977
    Location:477630
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
  2. NM_001290257.2NP_001277186.1  protein KHNYN isoform 1

    See identical proteins and their annotated locations for NP_001277186.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1 and 3 encode the same protein (isoform 1).
    Source sequence(s)
    AA493312, AB002321, AK291680, AL132800, BX161465
    Consensus CDS
    CCDS32058.1
    UniProtKB/Swiss-Prot
    O15037
    UniProtKB/TrEMBL
    A8K6L5
    Related
    ENSP00000451106.1, ENST00000556842.5
    Conserved Domains (1) summary
    pfam11977
    Location:436589
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
  3. NM_015299.3NP_056114.1  protein KHNYN isoform 1

    See identical proteins and their annotated locations for NP_056114.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1. Variants 1 and 3 encode the same protein.
    Source sequence(s)
    AL132800, BC015780, BX161465, CB115247, DA674601
    Consensus CDS
    CCDS32058.1
    UniProtKB/Swiss-Prot
    O15037
    Related
    ENSP00000450799.1, ENST00000553935.6
    Conserved Domains (1) summary
    pfam11977
    Location:436589
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    24423186..24441843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011536590.2XP_011534892.1  protein KHNYN isoform X1

    Conserved Domains (1) summary
    pfam11977
    Location:479632
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
  2. XM_017021114.2XP_016876603.1  protein KHNYN isoform X3

    Conserved Domains (1) summary
    pfam11977
    Location:436526
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
  3. XM_005267474.5XP_005267531.1  protein KHNYN isoform X2

    See identical proteins and their annotated locations for XP_005267531.1

    UniProtKB/Swiss-Prot
    O15037
    Conserved Domains (1) summary
    pfam11977
    Location:436589
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

RNA

  1. XR_002957541.1 RNA Sequence

  2. XR_001750203.2 RNA Sequence

  3. XR_943407.2 RNA Sequence

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