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Zfp114 zinc finger protein 114 [ Mus musculus (house mouse) ]

Gene ID: 232966, updated on 14-Apr-2023

Summary

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Official Symbol
Zfp114provided by MGI
Official Full Name
zinc finger protein 114provided by MGI
Primary source
MGI:MGI:3037815
See related
Ensembl:ENSMUSG00000068962 AllianceGenome:MGI:3037815
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1957; Zfp110
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in rest of cerebellum mantle layer and ventral grey horn. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Zfp114 in Genome Data Viewer
Location:
7; 7 A3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (23874468..23886990)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (24175022..24183170)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 112 Neighboring gene zinc finger protein 235 Neighboring gene zinc finger protein 111 Neighboring gene zinc finger protein 109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. Shannon M, et al. Genome Res, 2003 Jun. PMID 12743021, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC107483

General protein information

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Preferred Names
zinc finger protein 221

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029933.4 → NP_001025104.2  zinc finger protein 221 isoform a

    See identical proteins and their annotated locations for NP_001025104.2

    Status: VALIDATED

    Source sequence(s)
    AC138791
    Consensus CDS
    CCDS39826.1
    UniProtKB/TrEMBL
    Q3UGQ0, Q3UTF4
    Related
    ENSMUSP00000146241.2, ENSMUST00000206547.2
    Conserved Domains (4) summary
    COG5048
    Location:344 → 585
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:336 → 356
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 48
    KRAB; KRAB box
    pfam13465
    Location:320 → 345
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001404000.1 → NP_001390929.1  zinc finger protein 221 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC138791
    UniProtKB/TrEMBL
    Q3UTF4

  3. NM_001404001.1 → NP_001390930.1  zinc finger protein 221 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC138791

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    23874468..23886990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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