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Zscan18 zinc finger and SCAN domain containing 18 [ Mus musculus (house mouse) ]

Gene ID: 232875, updated on 8-Feb-2025

Summary

Official Symbol
Zscan18provided by MGI
Official Full Name
zinc finger and SCAN domain containing 18provided by MGI
Primary source
MGI:MGI:3643810
See related
Ensembl:ENSMUSG00000070822 AllianceGenome:MGI:3643810
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG232875
Summary
Orthologous to human ZSCAN18 (zinc finger and SCAN domain containing 18). [provided by Alliance of Genome Resources, Feb 2025]
Expression
Broad expression in CNS E18 (RPKM 4.5), CNS E14 (RPKM 2.9) and 19 other tissues See more
Orthologs
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Genomic context

See Zscan18 in Genome Data Viewer
Location:
7 A1; 7 7.63 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12502017..12537565, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (12768090..12811666, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene zinc finger protein 287 pseudogene Neighboring gene dnaJ homolog subfamily B member 6 pseudogene Neighboring gene zinc finger protein 329 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18057 Neighboring gene zinc finger protein 329 Neighboring gene zinc finger protein 110

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
zinc finger and SCAN domain-containing protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017955.3NP_001017955.2  zinc finger and SCAN domain-containing protein 18 isoform 1

    See identical proteins and their annotated locations for NP_001017955.2

    Status: VALIDATED

    Source sequence(s)
    AC161211
    Consensus CDS
    CCDS52021.1
    UniProtKB/TrEMBL
    E9PUD6
    Related
    ENSMUSP00000148239.2, ENSMUST00000211392.2
    Conserved Domains (3) summary
    sd00019
    Location:778798
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:398478
    SCAN; SCAN domain
    pfam05782
    Location:51160
    ECM1; Extracellular matrix protein 1 (ECM1)
  2. NM_001382523.1NP_001369452.1  zinc finger and SCAN domain-containing protein 18 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC161211
    UniProtKB/TrEMBL
    E9PUD6
    Related
    ENSMUSP00000147550.2, ENSMUST00000210650.2
    Conserved Domains (3) summary
    sd00019
    Location:778798
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:398478
    SCAN; SCAN domain
    pfam05782
    Location:51160
    ECM1; Extracellular matrix protein 1 (ECM1)
  3. NM_001382524.2NP_001369453.1  zinc finger and SCAN domain-containing protein 18 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC161211
    Conserved Domains (3) summary
    PTZ00121
    Location:44396
    PTZ00121; MAEBL; Provisional
    TIGR00927
    Location:43146
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam02023
    Location:398478
    SCAN; SCAN domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    12502017..12537565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006539794.5XP_006539857.1  zinc finger and SCAN domain-containing protein 18 isoform X3

    See identical proteins and their annotated locations for XP_006539857.1

    UniProtKB/TrEMBL
    E9PUD6
    Conserved Domains (3) summary
    sd00019
    Location:778798
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:398478
    SCAN; SCAN domain
    pfam05782
    Location:51160
    ECM1; Extracellular matrix protein 1 (ECM1)
  2. XM_011250508.4XP_011248810.1  zinc finger and SCAN domain-containing protein 18 isoform X3

    See identical proteins and their annotated locations for XP_011248810.1

    UniProtKB/TrEMBL
    E9PUD6
    Conserved Domains (3) summary
    sd00019
    Location:778798
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:398478
    SCAN; SCAN domain
    pfam05782
    Location:51160
    ECM1; Extracellular matrix protein 1 (ECM1)
  3. XM_006539791.5XP_006539854.1  zinc finger and SCAN domain-containing protein 18 isoform X2

    Conserved Domains (3) summary
    sd00019
    Location:819839
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:439526
    SCAN; SCAN domain
    pfam09770
    Location:41194
    PAT1; Topoisomerase II-associated protein PAT1
  4. XM_011250509.3XP_011248811.1  zinc finger and SCAN domain-containing protein 18 isoform X4

    Conserved Domains (2) summary
    pfam02023
    Location:453540
    SCAN; SCAN domain
    pfam09770
    Location:55208
    PAT1; Topoisomerase II-associated protein PAT1
  5. XM_011250507.3XP_011248809.1  zinc finger and SCAN domain-containing protein 18 isoform X1

    Conserved Domains (3) summary
    sd00019
    Location:833853
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:453540
    SCAN; SCAN domain
    pfam09770
    Location:55208
    PAT1; Topoisomerase II-associated protein PAT1
  6. XM_011250510.3XP_011248812.1  zinc finger and SCAN domain-containing protein 18 isoform X5

    Conserved Domains (2) summary
    pfam02023
    Location:453540
    SCAN; SCAN domain
    pfam09770
    Location:55208
    PAT1; Topoisomerase II-associated protein PAT1

RNA

  1. XR_004934062.1 RNA Sequence

  2. XR_004934066.1 RNA Sequence

  3. XR_003946439.2 RNA Sequence

  4. XR_004934068.1 RNA Sequence

  5. XR_004934067.1 RNA Sequence

  6. XR_004934063.1 RNA Sequence

  7. XR_881695.4 RNA Sequence

  8. XR_004934064.1 RNA Sequence

  9. XR_004934065.1 RNA Sequence

  10. XR_004934069.1 RNA Sequence