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Vwde von Willebrand factor D and EGF domains [ Mus musculus (house mouse) ]

Gene ID: 232585, updated on 24-Oct-2019

Summary

Official Symbol
Vwdeprovided by MGI
Official Full Name
von Willebrand factor D and EGF domainsprovided by MGI
Primary source
MGI:MGI:2685313
See related
Ensembl:ENSMUSG00000079679
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm467
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See Vwde in Genome Data Viewer
Location:
6; 6 A1
Exon count:
30
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (13156440..13224965, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (13135610..13174965, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 106B Neighboring gene predicted gene, 24985 Neighboring gene predicted gene 725 Neighboring gene RIKEN cDNA 1700016P04 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
von Willebrand factor D and EGF domain-containing protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013757.2NP_001013779.2  von Willebrand factor D and EGF domain-containing protein isoform 2 precursor

    See identical proteins and their annotated locations for NP_001013779.2

    Status: PROVISIONAL

    Source sequence(s)
    AC158682, BC076621
    Consensus CDS
    CCDS51722.1
    UniProtKB/Swiss-Prot
    Q6DFV8
    Related
    ENSMUSP00000058110.5, ENSMUST00000054530.6
    Conserved Domains (1) summary
    cl02516
    Location:436588
    VWD; von Willebrand factor type D domain
  2. NM_001368871.1NP_001355800.1  von Willebrand factor D and EGF domain-containing protein isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC158682
    Consensus CDS
    CCDS90028.1
    Related
    ENSMUSP00000145311.1, ENSMUST00000203074.2
    Conserved Domains (3) summary
    smart00179
    Location:12561294
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:12221254
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02516
    Location:436588
    VWD; von Willebrand factor type D domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p6 C57BL/6J

    Range
    13156440..13224965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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