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Ppp4r2 protein phosphatase 4, regulatory subunit 2 [ Mus musculus (house mouse) ]

Gene ID: 232314, updated on 23-May-2018

Summary

Official Symbol
Ppp4r2provided by MGI
Official Full Name
protein phosphatase 4, regulatory subunit 2provided by MGI
Primary source
MGI:MGI:3027896
See related
Ensembl:ENSMUSG00000052144 Vega:OTTMUSG00000057214
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BE691708; C230060M08Rik
Expression
Broad expression in CNS E11.5 (RPKM 16.8), CNS E14 (RPKM 12.1) and 24 other tissues See more
Orthologs

Genomic context

See Ppp4r2 in Genome Data Viewer
Location:
6; 6 D3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (100833634..100869934)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (100783632..100818711)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene SHQ1 homolog (S. cerevisiae) Neighboring gene ubiquitin-conjugating enzyme E2 variant 2 pseudogene Neighboring gene glucoside xylosyltransferase 2 Neighboring gene high mobility group box 3 pseudogene Neighboring gene transmembrane protein 258 pseudogene Neighboring gene PDZ domain containing RING finger 3 Neighboring gene predicted gene, 26911

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding, bridging ISO
Inferred from Sequence Orthology
more info
 
protein phosphatase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphatase regulator activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
hematopoietic progenitor cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
protein dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of double-strand break repair via homologous recombination ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
protein phosphatase 4 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphatase 4 complex IDA
Inferred from Direct Assay
more info
PubMed 
protein phosphatase 4 complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
serine/threonine-protein phosphatase 4 regulatory subunit 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182939.4NP_891984.1  serine/threonine-protein phosphatase 4 regulatory subunit 2

    See identical proteins and their annotated locations for NP_891984.1

    Status: PROVISIONAL

    Source sequence(s)
    AC155648
    Consensus CDS
    CCDS20391.1
    UniProtKB/Swiss-Prot
    Q0VGB7
    UniProtKB/TrEMBL
    A0A0R4J0U2
    Related
    ENSMUSP00000066314.4, OTTMUSP00000073702, ENSMUST00000063854.6, OTTMUST00000140855
    Conserved Domains (1) summary
    pfam09184
    Location:6258
    PPP4R2; PPP4R2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    100833634..100869934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506008.3XP_006506071.1  serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X1

    Related
    ENSMUSP00000145102.1, OTTMUSP00000073734, ENSMUST00000203580.1, OTTMUST00000140951
    Conserved Domains (1) summary
    pfam09184
    Location:6259
    PPP4R2; PPP4R2
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