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Gimap6 GTPase, IMAP family member 6 [ Mus musculus (house mouse) ]

Gene ID: 231931, updated on 9-Sep-2018

Summary

Official Symbol
Gimap6provided by MGI
Official Full Name
GTPase, IMAP family member 6provided by MGI
Primary source
MGI:MGI:1918876
See related
Ensembl:ENSMUSG00000047867 Vega:OTTMUSG00000026908
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ian6; mFLJ00102; 4833419H03Rik
Summary
This gene encodes a protein belonging to the GTP-binding superfamily and to the immuno-associated nucleotide (IAN) subfamily of nucleotide-binding proteins. In humans, the IAN subfamily genes are located in a cluster at 7q36.1. [provided by RefSeq, Jul 2008]
Expression
Broad expression in thymus adult (RPKM 22.4), spleen adult (RPKM 22.3) and 21 other tissues See more
Orthologs

Genomic context

See Gimap6 in Genome Data Viewer
Location:
6; 6 B2.3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (48701583..48708244, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (48651582..48658243, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 46958 Neighboring gene GTPase, IMAP family member 9 Neighboring gene GTPase, IMAP family member 4 Neighboring gene GTPase, IMAP family member 7 Neighboring gene GTPase, IMAP family member 1, opposite strand Neighboring gene GTPase, IMAP family member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Clone Names

  • FLJ00102, MGC41522

Gene Ontology Provided by MGI

Function Evidence Code Pubs
GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
GTPase IMAP family member 6
Names
IAN-6
immune associated nucleotide 6
immunity-associated nucleotide 6 protein
mIAN6

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153175.3NP_694815.1  GTPase IMAP family member 6

    See identical proteins and their annotated locations for NP_694815.1

    Status: REVIEWED

    Source sequence(s)
    AK050328, BC028779, BU699766
    Consensus CDS
    CCDS20111.1
    UniProtKB/Swiss-Prot
    Q8K349
    Related
    ENSMUSP00000059371.4, OTTMUSP00000033363, ENSMUST00000053661.6, OTTMUST00000066545
    Conserved Domains (1) summary
    cd01852
    Location:104297
    AIG1; AvrRpt2-Induced Gene 1 (AIG1)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    48701583..48708244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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