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SSPOP SCO-spondin, pseudogene [ Homo sapiens (human) ]

Gene ID: 23145, updated on 24-Nov-2020

Summary

Official Symbol
SSPOPprovided by HGNC
Official Full Name
SCO-spondin, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:21998
See related
Ensembl:ENSG00000197558 MIM:617356
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SSPO
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See SSPOP in Genome Data Viewer
Location:
7q36.1
Exon count:
103
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (149776042..149833965)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (149473131..149531054)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene tRNA-Cys (anticodon GCA) 9-4 Neighboring gene KRAB-A domain containing 1 Neighboring gene zinc finger protein 467 Neighboring gene zinc finger protein 862 Neighboring gene ATP6V0E2 antisense RNA 1 Neighboring gene ATPase H+ transporting V0 subunit e2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • SCO protein, thrombospondin domain containing
  • SCO-spondin
  • SCO-spondin homolog (Bos taurus)
  • subcommissural organ spondin

Clone Names

  • FLJ36112, FLJ45737, KIAA2036

Gene Ontology Provided by GOA

Function Evidence Code Pubs
peptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of peptidase activity IEA
Inferred from Electronic Annotation
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space TAS
Traceable Author Statement
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_163594.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004877, KF459635, KF459640, KF495712
    Related
    ENST00000378016.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    149776042..149833965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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