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Atpaf1 ATP synthase mitochondrial F1 complex assembly factor 1 [ Mus musculus (house mouse) ]

Gene ID: 230649, updated on 30-Apr-2024

Summary

Official Symbol
Atpaf1provided by MGI
Official Full Name
ATP synthase mitochondrial F1 complex assembly factor 1provided by MGI
Primary source
MGI:MGI:2180560
See related
Ensembl:ENSMUSG00000028710 AllianceGenome:MGI:2180560
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ATP11; ATP11p; 6330547J17Rik
Summary
Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Located in mitochondrion. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 19.3), ovary adult (RPKM 14.6) and 28 other tissues See more
Orthologs
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Genomic context

See Atpaf1 in Genome Data Viewer
Location:
4 D1; 4 53.06 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (115642025..115669120)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (115784828..115811923)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene Neighboring gene EF-hand calcium binding domain 14 Neighboring gene testis expressed 38 Neighboring gene STARR-seq mESC enhancer starr_11125 Neighboring gene STARR-positive B cell enhancer ABC_E1650 Neighboring gene MOB kinase activator 3C Neighboring gene STARR-positive B cell enhancer ABC_E6199 Neighboring gene MAP kinase-interacting serine/threonine kinase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General protein information

Preferred Names
ATP synthase mitochondrial F1 complex assembly factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001369233.1NP_001356162.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL626806
    Consensus CDS
    CCDS89811.1
    UniProtKB/Swiss-Prot
    Q811I0
    UniProtKB/TrEMBL
    V9GX21
    Related
    ENSMUSP00000158943.2, ENSMUST00000239030.2
    Conserved Domains (1) summary
    pfam06644
    Location:73303
    ATP11; ATP11 protein
  2. NM_181040.5NP_851383.2  ATP synthase mitochondrial F1 complex assembly factor 1 isoform 1

    See identical proteins and their annotated locations for NP_851383.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL626806
    Consensus CDS
    CCDS18496.2
    UniProtKB/TrEMBL
    H3BLL2
    Related
    ENSMUSP00000135831.2, ENSMUST00000176047.8
    Conserved Domains (1) summary
    pfam06644
    Location:97329
    ATP11; ATP11 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    115642025..115669120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)