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STK38L serine/threonine kinase 38 like [ Homo sapiens (human) ]

Gene ID: 23012, updated on 4-Nov-2018

Summary

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Official Symbol
STK38Lprovided by HGNC
Official Full Name
serine/threonine kinase 38 likeprovided by HGNC
Primary source
HGNC:HGNC:17848
See related
Ensembl:ENSG00000211455 MIM:615836; Vega:OTTHUMG00000169284
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NDR2
Expression
Ubiquitous expression in gall bladder (RPKM 16.1), heart (RPKM 15.2) and 25 other tissues See more
Orthologs
mouse all

Genomic context

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See STK38L in Genome Data Viewer
Location:
12p11.23
Exon count:
20
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 12 NC_000012.12 (27244145..27325959)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (27397078..27478892)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene nontranscribed chromatin-defined enhancer upstream of C12orf71 Neighboring gene chromosome 12 open reading frame 71 Neighboring gene aryl hydrocarbon receptor nuclear translocator like 2 Neighboring gene ARNTL2 antisense RNA 1 Neighboring gene single-pass membrane protein with coiled-coil domains 2 Neighboring gene arginyl-tRNA synthetase pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

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Related articles in PubMed

  1. [Role of PLAT, PKHD1L1, STK38L and TEAD1 genes Alu-polymorphism for longevity]. Erdman VV, et al. Adv Gerontol, 2016. PMID 28556638
  2. NDR2 acts as the upstream kinase of ARK5 during insulin-like growth factor-1 signaling. Suzuki A, et al. J Biol Chem, 2006 May 19. PMID 16488889
  3. Cyclin D1 promotes cell cycle progression through enhancing NDR1/2 kinase activity independent of cyclin-dependent kinase 4. Du Z, et al. J Biol Chem, 2013 Sep 13. PMID 23897809, Free PMC Article
  4. Human NDR kinases control G(1)/S cell cycle transition by directly regulating p21 stability. Cornils H, et al. Mol Cell Biol, 2011 Apr. PMID 21262772, Free PMC Article
  5. Regulation of NDR protein kinase by hydrophobic motif phosphorylation mediated by the mammalian Ste20-like kinase MST3. Stegert MR, et al. Mol Cell Biol, 2005 Dec. PMID 16314523, Free PMC Article

See all (44) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  1. It was found that STK38L*I/D genotype had positive association with longevity in the ethnically homogeneous group of Tatars from the Republic of Bashkortostan, Russia.
    Title: [Role of PLAT, PKHD1L1, STK38L and TEAD1 genes Alu-polymorphism for longevity].
  2. cyclin D1 has a role in promoting cell cycle progression by enhancing NDR1/2 kinase activity independent of Cdk4
    Title: Cyclin D1 promotes cell cycle progression through enhancing NDR1/2 kinase activity independent of cyclin-dependent kinase 4.
  3. NDR2-mediated Rabin8 phosphorylation is crucial for ciliogenesis by triggering the switch in binding specificity of Rabin8 from PS to Sec15.
    Title: NDR2-mediated Rabin8 phosphorylation is crucial for ciliogenesis by switching binding specificity from phosphatidylserine to Sec15.
  4. These findings establish a novel MST3-NDR-p21 axis as an important regulator of G(1)/S progression of mammalian cells.
    Title: Human NDR kinases control G(1)/S cell cycle transition by directly regulating p21 stability.
  5. Observational study of gene-disease association. (HuGE Navigator)
    Title: Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.
  6. findings identify NDR1/2 as novel proapoptotic kinases and key members of the RASSF1A/MST1 signaling cascade
    Title: NDR kinase is activated by RASSF1A/MST1 in response to Fas receptor stimulation and promotes apoptosis.
  7. The NDR1 and NDR2 kinases were incorporated into HIV-1 particles and were cleaved by the HIV-1 protease.
    Title: HIV-1 incorporates and proteolytically processes human NDR1 and NDR2 serine-threonine kinases.
  8. NDR1 and NDR2 serine-threonine kinases are regulated by mob proteins
    Title: Human Mob proteins regulate the NDR1 and NDR2 serine-threonine kinases.
  9. Activation of NDR2 is a multistep process involving phosphorylation of the hydrophobic motif site Thr444/2 by MST3, autophosphorylation of Ser281/2, and binding of MOB1A.
    Title: Regulation of NDR protein kinase by hydrophobic motif phosphorylation mediated by the mammalian Ste20-like kinase MST3.
  10. NDR2 is an upstream kinase of ARK5 that plays an essential role in tumor progression through ARK5
    Title: NDR2 acts as the upstream kinase of ARK5 during insulin-like growth factor-1 signaling.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
retropepsin gag-pol Two related serine-threonine kinases, nuclear Dbf2 related 1 (NDR1) and NDR2, are incorporated into HIV-1 particles and are cleaved by the HIV-1 protease (PR), both within virions and within producer cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA0965

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATP binding IDA
Inferred from Direct Assay
more info
 PubMed 
actin binding IEA
Inferred from Electronic Annotation
more info
  
magnesium ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
intracellular signal transduction IDA
Inferred from Direct Assay
more info
 PubMed 
peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
protein phosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
regulation of cellular component organization ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
actin cytoskeleton ISS
Inferred from Sequence or Structural Similarity
more info
  
cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
cytosol IDA
Inferred from Direct Assay
more info
  
membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/threonine-protein kinase 38-like
Names
NDR2 protein kinase
nuclear Dbf2-related 2
nuclear Dbf2-related kinase 2
NP_055815.1
XP_005253399.1
XP_006719121.1
XP_006719122.1
XP_011518915.1
XP_024304657.1
XP_024304658.1
XP_024304659.1
XP_024304660.1
XP_024304661.1
XP_024304662.1
XP_024304663.1
XP_024304664.1
XP_024304665.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015000.3 → NP_055815.1  serine/threonine-protein kinase 38-like

    See identical proteins and their annotated locations for NP_055815.1

    Status: VALIDATED

    Source sequence(s)
    AB023182, BU681056, BX390969
    Consensus CDS
    CCDS31761.1
    UniProtKB/Swiss-Prot
    Q9Y2H1
    Related
    ENSP00000373684.3, OTTHUMP00000240676, ENST00000389032.7, OTTHUMT00000403297
    Conserved Domains (1) summary
    cd05627
    Location:87 → 452
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p12 Primary Assembly

    Range
    27244145..27325959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006719059.3 → XP_006719122.1  serine/threonine-protein kinase 38-like isoform X4

    See identical proteins and their annotated locations for XP_006719122.1

    Conserved Domains (2) summary
    smart00220
    Location:38 → 331
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd05627
    Location:35 → 400
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  2. XM_024448889.1 → XP_024304657.1  serine/threonine-protein kinase 38-like isoform X1

    Conserved Domains (1) summary
    cd05627
    Location:87 → 509
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  3. XM_005253342.4 → XP_005253399.1  serine/threonine-protein kinase 38-like isoform X3

    See identical proteins and their annotated locations for XP_005253399.1

    Conserved Domains (2) summary
    smart00220
    Location:62 → 342
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cl21453
    Location:62 → 411
    PKc_like; Protein Kinases, catalytic domain

  4. XM_024448891.1 → XP_024304659.1  serine/threonine-protein kinase 38-like isoform X1

    Conserved Domains (1) summary
    cd05627
    Location:87 → 509
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  5. XM_006719058.4 → XP_006719121.1  serine/threonine-protein kinase 38-like isoform X2

    See identical proteins and their annotated locations for XP_006719121.1

    UniProtKB/Swiss-Prot
    Q9Y2H1
    Conserved Domains (1) summary
    cd05627
    Location:87 → 452
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  6. XM_024448892.1 → XP_024304660.1  serine/threonine-protein kinase 38-like isoform X1

    Conserved Domains (1) summary
    cd05627
    Location:87 → 509
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  7. XM_024448897.1 → XP_024304665.1  serine/threonine-protein kinase 38-like isoform X2

  8. XM_024448893.1 → XP_024304661.1  serine/threonine-protein kinase 38-like isoform X1

    Conserved Domains (1) summary
    cd05627
    Location:87 → 509
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  9. XM_024448896.1 → XP_024304664.1  serine/threonine-protein kinase 38-like isoform X2

  10. XM_024448890.1 → XP_024304658.1  serine/threonine-protein kinase 38-like isoform X1

    Conserved Domains (1) summary
    cd05627
    Location:87 → 509
    STKc_NDR2; Catalytic domain of the Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

  11. XM_024448894.1 → XP_024304662.1  serine/threonine-protein kinase 38-like isoform X2

  12. XM_024448895.1 → XP_024304663.1  serine/threonine-protein kinase 38-like isoform X2

  13. XM_011520613.2 → XP_011518915.1  serine/threonine-protein kinase 38-like isoform X5

    See identical proteins and their annotated locations for XP_011518915.1

    UniProtKB/Swiss-Prot
    Q9Y2H1
    Conserved Domains (2) summary
    smart00220
    Location:10 → 290
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cl21453
    Location:10 → 359
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_001748626.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9Y2H1.3 GenPept UniProtKB/Swiss-Prot:Q9Y2H1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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