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6330549D23Rik RIKEN cDNA 6330549D23 gene [ Mus musculus (house mouse) ]

Gene ID: 229613, updated on 26-Sep-2022

Summary

Official Symbol
6330549D23Rikprovided by MGI
Official Full Name
RIKEN cDNA 6330549D23 geneprovided by MGI
Primary source
MGI:MGI:2442586
See related
Ensembl:ENSMUSG00000045327 AllianceGenome:MGI:2442586
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in CNS E11.5 (RPKM 2.1), limb E14.5 (RPKM 1.5) and 28 other tissues See more
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Genomic context

See 6330549D23Rik in Genome Data Viewer
Location:
3; 3 F2.1
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (96513978..96537135, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (96606662..96629819, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene polymerase (RNA) III (DNA directed) polypeptide G like Neighboring gene ankyrin repeat domain 34A Neighboring gene predicted gene, 52628 Neighboring gene Lix1-like Neighboring gene RNA binding motif protein 8a Neighboring gene peroxisomal biogenesis factor 11 beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003619.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122037
    Related
    ENSMUST00000059190.4

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    96513978..96537135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175469.1: Suppressed sequence

    Description
    NM_175469.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.