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Zim1 zinc finger, imprinted 1 [ Mus musculus (house mouse) ]

Gene ID: 22776, updated on 12-May-2024

Summary

Official Symbol
Zim1provided by MGI
Official Full Name
zinc finger, imprinted 1provided by MGI
Primary source
MGI:MGI:1341879
See related
Ensembl:ENSMUSG00000002266 AllianceGenome:MGI:1341879
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including brain; extraembryonic component; genitourinary system; limb; and ventral grey horn. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in limb E14.5 (RPKM 16.9), placenta adult (RPKM 4.9) and 8 other tissues See more
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Genomic context

See Zim1 in Genome Data Viewer
Location:
7 A1; 7 3.87 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6677443..6699521, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6674444..6696540, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17982 Neighboring gene olfactory receptor family 5 subfamily BW member 2 Neighboring gene zinc finger, imprinted 2 Neighboring gene STARR-seq mESC enhancer starr_17985 Neighboring gene Peg3 opposite strand Neighboring gene paternally expressed 3 Neighboring gene Tctex1 domain containing 2 pseudogene Neighboring gene ubiquitin specific peptidase 29

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (3)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011769.4NP_035899.4  zinc finger, imprinted 1

    See identical proteins and their annotated locations for NP_035899.4

    Status: VALIDATED

    Source sequence(s)
    AK086590, BC066196, CD349354
    Consensus CDS
    CCDS20782.1
    UniProtKB/TrEMBL
    Q8C393
    Related
    ENSMUSP00000002336.9, ENSMUST00000002336.16
    Conserved Domains (5) summary
    PRK13335
    Location:137269
    PRK13335; superantigen-like protein SSL3; Reviewed
    smart00349
    Location:50105
    KRAB; krueppel associated box
    COG5048
    Location:226427
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:437459
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    6677443..6699521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250495.3XP_011248797.1  zinc finger, imprinted 1 isoform X1

    See identical proteins and their annotated locations for XP_011248797.1

    UniProtKB/TrEMBL
    Q8C393
    Conserved Domains (5) summary
    PRK13335
    Location:137269
    PRK13335; superantigen-like protein SSL3; Reviewed
    smart00349
    Location:50105
    KRAB; krueppel associated box
    COG5048
    Location:226427
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:437459
    zf-C2H2; Zinc finger, C2H2 type
  2. XM_011250499.3XP_011248801.1  zinc finger, imprinted 1 isoform X1

    See identical proteins and their annotated locations for XP_011248801.1

    UniProtKB/TrEMBL
    Q8C393
    Conserved Domains (5) summary
    PRK13335
    Location:137269
    PRK13335; superantigen-like protein SSL3; Reviewed
    smart00349
    Location:50105
    KRAB; krueppel associated box
    COG5048
    Location:226427
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:437459
    zf-C2H2; Zinc finger, C2H2 type
  3. XM_011250498.3XP_011248800.1  zinc finger, imprinted 1 isoform X2

    Conserved Domains (4) summary
    PRK13335
    Location:59191
    PRK13335; superantigen-like protein SSL3; Reviewed
    COG5048
    Location:148349
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:249269
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:127
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
  4. XM_011250497.3XP_011248799.1  zinc finger, imprinted 1 isoform X1

    See identical proteins and their annotated locations for XP_011248799.1

    UniProtKB/TrEMBL
    Q8C393
    Conserved Domains (5) summary
    PRK13335
    Location:137269
    PRK13335; superantigen-like protein SSL3; Reviewed
    smart00349
    Location:50105
    KRAB; krueppel associated box
    COG5048
    Location:226427
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:437459
    zf-C2H2; Zinc finger, C2H2 type