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Rabepk Rab9 effector protein with kelch motifs [ Mus musculus (house mouse) ]

Gene ID: 227746, updated on 31-Jan-2019

Summary

Official Symbol
Rabepkprovided by MGI
Official Full Name
Rab9 effector protein with kelch motifsprovided by MGI
Primary source
MGI:MGI:2139530
See related
Ensembl:ENSMUSG00000070953
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C87311; Rab9p40; AV073337; 8430412M01Rik; 9530020D24Rik
Expression
Broad expression in testis adult (RPKM 48.4), genital fat pad adult (RPKM 5.2) and 18 other tissues See more
Orthologs

Genomic context

See Rabepk in Genome Data Viewer
Location:
2; 2 B
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (34774782..34800164, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (34634186..34655311, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34372 Neighboring gene DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene Neighboring gene GTPase activating protein and VPS9 domains 1 Neighboring gene heat shock protein 5 Neighboring gene F-box and WD-40 domain protein 2 Neighboring gene predicted gene, 34653

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
endosome IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
rab9 effector protein with kelch motifs
Names
Rab9 effector p40

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145522.4NP_663497.2  rab9 effector protein with kelch motifs

    See identical proteins and their annotated locations for NP_663497.2

    Status: VALIDATED

    Source sequence(s)
    AK035343, AL929106
    Consensus CDS
    CCDS15951.1
    UniProtKB/Swiss-Prot
    Q8VCH5
    Related
    ENSMUSP00000122360.1, ENSMUST00000145903.7
    Conserved Domains (4) summary
    smart00612
    Location:264309
    Kelch; Kelch domain
    sd00038
    Location:94143
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:200243
    Kelch_1; Kelch motif
    pfam13415
    Location:157209
    Kelch_3; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    34774782..34800164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317453.1XP_017172942.1  rab9 effector protein with kelch motifs isoform X4

  2. XM_006497984.3XP_006498047.1  rab9 effector protein with kelch motifs isoform X1

    Conserved Domains (4) summary
    smart00612
    Location:263308
    Kelch; Kelch domain
    sd00038
    Location:94142
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:199242
    Kelch_1; Kelch motif
    pfam13415
    Location:156208
    Kelch_3; Galactose oxidase, central domain
  3. XM_006497986.2XP_006498049.1  rab9 effector protein with kelch motifs isoform X3

    See identical proteins and their annotated locations for XP_006498049.1

    Conserved Domains (4) summary
    smart00612
    Location:189234
    Kelch; Kelch domain
    sd00038
    Location:1968
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:125168
    Kelch_1; Kelch motif
    pfam13415
    Location:82134
    Kelch_3; Galactose oxidase, central domain
  4. XM_006497989.2XP_006498052.1  rab9 effector protein with kelch motifs isoform X6

    Conserved Domains (4) summary
    smart00612
    Location:137182
    Kelch; Kelch domain
    sd00038
    Location:2070
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:73116
    Kelch_1; Kelch motif
    pfam13415
    Location:3082
    Kelch_3; Galactose oxidase, central domain
  5. XM_006497985.3XP_006498048.1  rab9 effector protein with kelch motifs isoform X2

    UniProtKB/TrEMBL
    B0R0S4
    Related
    ENSMUSP00000113099.1, ENSMUST00000118108.1
    Conserved Domains (4) summary
    smart00612
    Location:256301
    Kelch; Kelch domain
    sd00038
    Location:86135
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:192235
    Kelch_1; Kelch motif
    pfam13415
    Location:149201
    Kelch_3; Galactose oxidase, central domain
  6. XM_006497987.3XP_006498050.1  rab9 effector protein with kelch motifs isoform X3

    See identical proteins and their annotated locations for XP_006498050.1

    Conserved Domains (4) summary
    smart00612
    Location:189234
    Kelch; Kelch domain
    sd00038
    Location:1968
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:125168
    Kelch_1; Kelch motif
    pfam13415
    Location:82134
    Kelch_3; Galactose oxidase, central domain
  7. XM_006497988.2XP_006498051.1  rab9 effector protein with kelch motifs isoform X5

    Conserved Domains (4) summary
    smart00612
    Location:138183
    Kelch; Kelch domain
    sd00038
    Location:2172
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:74117
    Kelch_1; Kelch motif
    pfam13415
    Location:3183
    Kelch_3; Galactose oxidase, central domain
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