Format

Send to:

Choose Destination

Coq4 coenzyme Q4 [ Mus musculus (house mouse) ]

Gene ID: 227683, updated on 5-Aug-2018

Summary

Official Symbol
Coq4provided by MGI
Official Full Name
coenzyme Q4provided by MGI
Primary source
MGI:MGI:1098826
See related
Ensembl:ENSMUSG00000026798 Vega:OTTMUSG00000012685
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D2Ertd97e
Expression
Ubiquitous expression in testis adult (RPKM 15.4), duodenum adult (RPKM 13.3) and 28 other tissues See more
Orthologs

Genomic context

See Coq4 in Genome Data Viewer
Location:
2 B; 2 20.62 cM
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (29788187..29797743)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (29643783..29653263)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13420 Neighboring gene predicted gene 13547 Neighboring gene TruB pseudouridine (psi) synthase family member 2 Neighboring gene solute carrier family 27 (fatty acid transporter), member 4 Neighboring gene ubiquitin related modifier 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • A330041N06

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
ubiquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion HDA PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ubiquinone biosynthesis protein COQ4 homolog, mitochondrial
Names
coenzyme Q biosynthesis protein 4 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178693.5NP_848808.1  ubiquinone biosynthesis protein COQ4 homolog, mitochondrial

    See identical proteins and their annotated locations for NP_848808.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the functional protein.
    Source sequence(s)
    AK050459, AK163270, AL845323
    Consensus CDS
    CCDS15857.1
    UniProtKB/Swiss-Prot
    Q8BGB8
    UniProtKB/TrEMBL
    B9EID1
    Related
    ENSMUSP00000028137.3, OTTMUSP00000013606, ENSMUST00000028137.9, OTTMUST00000030237
    Conserved Domains (1) summary
    pfam05019
    Location:63259
    Coq4; Coenzyme Q (ubiquinone) biosynthesis protein Coq4

RNA

  1. NR_145503.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses two alternate splice sites in internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK163270, AL845323
  2. NR_145504.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK050459, AK163270, AL845323

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    29788187..29797743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317287.1XP_017172776.1  ubiquinone biosynthesis protein COQ4 homolog, mitochondrial isoform X1

  2. XM_011239076.2XP_011237378.1  ubiquinone biosynthesis protein COQ4 homolog, mitochondrial isoform X2

    Related
    ENSMUSP00000135687.1, OTTMUSP00000061469, ENSMUST00000176348.7, OTTMUST00000110251
    Conserved Domains (1) summary
    cl02093
    Location:63126
    Coq4; Coenzyme Q (ubiquinone) biosynthesis protein Coq4

RNA

  1. XR_374084.3 RNA Sequence

  2. XR_001782055.1 RNA Sequence

Support Center