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Tor4a torsin family 4, member A [ Mus musculus (house mouse) ]

Gene ID: 227612, updated on 23-Jun-2021

Summary

Official Symbol
Tor4aprovided by MGI
Official Full Name
torsin family 4, member Aprovided by MGI
Primary source
MGI:MGI:2442720
See related
Ensembl:ENSMUSG00000059555
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A830007P12Rik
Expression
Broad expression in spleen adult (RPKM 28.6), colon adult (RPKM 23.1) and 20 other tissues See more
Orthologs
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Genomic context

See Tor4a in Genome Data Viewer
Location:
2; 2 A3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25082732..25086825, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25192720..25196813, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (25048240..25052333, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene Notch-regulated ankyrin repeat protein Neighboring gene predicted gene, 52547 Neighboring gene negative elongation factor complex member B Neighboring gene predicted gene, 22572 Neighboring gene sperm tail PG rich repeat containing 3 Neighboring gene family with sequence similarity 166, member A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC7940

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum lumen IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nuclear envelope IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
torsin-4A
Names
torsin family protein C9orf167 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_146115.4NP_666227.2  torsin-4A

    See identical proteins and their annotated locations for NP_666227.2

    Status: VALIDATED

    Source sequence(s)
    AK043559, BY199544
    Consensus CDS
    CCDS15750.1
    UniProtKB/Swiss-Prot
    Q8BH02
    Related
    ENSMUSP00000080548.7, ENSMUST00000081869.7
    Conserved Domains (1) summary
    pfam06309
    Location:144246
    Torsin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    25082732..25086825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160652.1XP_036016545.1  torsin-4A isoform X1

    Conserved Domains (1) summary
    pfam06309
    Location:144246
    Torsin
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