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Ccnyl1 cyclin Y-like 1 [ Mus musculus (house mouse) ]

Gene ID: 227210, updated on 26-Sep-2022

Summary

Official Symbol
Ccnyl1provided by MGI
Official Full Name
cyclin Y-like 1provided by MGI
Primary source
MGI:MGI:2138614
See related
Ensembl:ENSMUSG00000070871 AllianceGenome:MGI:2138614
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9630037P07Rik
Summary
Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within flagellated sperm motility; regulation of protein kinase activity; and spermatogenesis. Located in plasma membrane. Is expressed in several structures, including genitourinary system; gut; liver; mammary gland; and spleen. Orthologous to human CCNYL1 (cyclin Y like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 21.2), limb E14.5 (RPKM 6.5) and 26 other tissues See more
Orthologs
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Genomic context

See Ccnyl1 in Genome Data Viewer
Location:
1; 1 C2
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (64729963..64764805)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (64691041..64725646)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene 29152 Neighboring gene RIKEN cDNA 2810408I11 gene Neighboring gene frizzled class receptor 5 Neighboring gene pleckstrin homology domain containing, family M, member 3 Neighboring gene leucine rich repeat containing 15 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097644.1NP_001091113.1  cyclin-Y-like protein 1

    See identical proteins and their annotated locations for NP_001091113.1

    Status: VALIDATED

    Source sequence(s)
    AK079350, AK132782, BE944301, CN668580, DV657169
    Consensus CDS
    CCDS48281.1
    UniProtKB/TrEMBL
    E9Q226
    Related
    ENSMUSP00000092499.4, ENSMUST00000094898.5
    Conserved Domains (1) summary
    pfam00134
    Location:124215
    Cyclin_N; Cyclin, N-terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    64729963..64764805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006495953.4XP_006496016.1  cyclin-Y-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006496016.1

    Conserved Domains (1) summary
    cd20540
    Location:138234
    CYCLIN_CCNY_like; cyclin box found in cyclin-Y (CCNY) family
  2. XM_011238499.3XP_011236801.1  cyclin-Y-like protein 1 isoform X1

    Related
    ENSMUSP00000109711.2, ENSMUST00000114077.8
    Conserved Domains (1) summary
    pfam00134
    Location:197288
    Cyclin_N; Cyclin, N-terminal domain