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Zfp61 zinc finger protein 61 [ Mus musculus (house mouse) ]

Gene ID: 22719, updated on 30-Apr-2024

Summary

Official Symbol
Zfp61provided by MGI
Official Full Name
zinc finger protein 61provided by MGI
Primary source
MGI:MGI:99663
See related
Ensembl:ENSMUSG00000050605 AllianceGenome:MGI:99663
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in bladder; female associated reproductive structure; ovary; ureter; and urethra of female. Orthologous to human ZNF226 (zinc finger protein 226). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 6.6), CNS E14 (RPKM 6.1) and 25 other tissues See more
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Genomic context

See Zfp61 in Genome Data Viewer
Location:
7 A3; 7 10.27 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (23990470..24003273, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (24291045..24303840, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 51 pseudogene Neighboring gene predicted gene, 50477 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:25084411-25084520 Neighboring gene zinc finger protein 94 Neighboring gene predicted gene, 51470 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:25101698-25101895 Neighboring gene predicted gene 44513

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009561.2NP_033587.2  zinc finger protein 155

    See identical proteins and their annotated locations for NP_033587.2

    Status: VALIDATED

    Source sequence(s)
    AK149960, BY271078, BY420227
    Consensus CDS
    CCDS39829.1
    UniProtKB/TrEMBL
    Q923D1
    Related
    ENSMUSP00000076954.8, ENSMUST00000077780.14
    Conserved Domains (3) summary
    smart00349
    Location:463
    KRAB; krueppel associated box
    COG5048
    Location:338526
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:341361
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    23990470..24003273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242398.2XP_030098258.1  zinc finger protein 155 isoform X1

    UniProtKB/TrEMBL
    Q923D1
    Conserved Domains (3) summary
    smart00349
    Location:463
    KRAB; krueppel associated box
    COG5048
    Location:338526
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:341361
    ZF_C2H2; C2H2 Zn finger [structural motif]