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Zfp51 zinc finger protein 51 [ Mus musculus (house mouse) ]

Gene ID: 22709, updated on 16-Oct-2021

Summary

Official Symbol
Zfp51provided by MGI
Official Full Name
zinc finger protein 51provided by MGI
Primary source
MGI:MGI:99198
See related
Ensembl:ENSMUSG00000023892
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfp-51; zfec12
Expression
Broad expression in bladder adult (RPKM 3.0), placenta adult (RPKM 2.8) and 24 other tissues See more
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Genomic context

See Zfp51 in Genome Data Viewer
Location:
17 A3.2; 17 11.4 cM
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (21670636..21685853)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (21450374..21465591)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (21587316..21602555)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 677 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene zinc finger protein 54 Neighboring gene predicted gene, 52290 Neighboring gene zinc finger protein 53

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308323.1NP_001295252.1  zinc finger protein 51

    See identical proteins and their annotated locations for NP_001295252.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK133677, CK390565, CT010433
    Consensus CDS
    CCDS37463.1
    UniProtKB/TrEMBL
    Q3U4L8, Q3UZS6
    Conserved Domains (4) summary
    COG5048
    Location:327749
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:239318
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:581601
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4282
    KRAB; KRAB box
  2. NM_009558.4NP_033584.3  zinc finger protein 51

    See identical proteins and their annotated locations for NP_033584.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK133677, CK390565, CT010433
    Consensus CDS
    CCDS37463.1
    UniProtKB/TrEMBL
    Q3U4L8, Q3UZS6
    Related
    ENSMUSP00000045684.6, ENSMUST00000039577.8
    Conserved Domains (4) summary
    COG5048
    Location:327749
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:239318
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:581601
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4282
    KRAB; KRAB box

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    21670636..21685853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249754.1XP_030105614.1  zinc finger protein 51 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:327749
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:239318
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:581601
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4282
    KRAB; KRAB box
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