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Zfp35 zinc finger protein 35 [ Mus musculus (house mouse) ]

Gene ID: 22694, updated on 12-Aug-2018

Summary

Official Symbol
Zfp35provided by MGI
Official Full Name
zinc finger protein 35provided by MGI
Primary source
MGI:MGI:99179
See related
Ensembl:ENSMUSG00000063281 Vega:OTTMUSG00000033724
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfp-35; Znf271; mszf13; mszf28; mszf68; mszf20-1
Expression
Broad expression in testis adult (RPKM 4.4), CNS E11.5 (RPKM 3.4) and 20 other tissues See more

Genomic context

See Zfp35 in Genome Data Viewer
Location:
18; 18 A2
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (23989634..24005371)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (24148135..24163872)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 30 Neighboring gene ribosomal protein L19, pseudogene 7 Neighboring gene zinc finger protein 397 Neighboring gene zinc finger protein 24 Neighboring gene ribosomal protein S8 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
inflammatory response to antigenic stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of T-helper 2 cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of type 2 immune response IMP
Inferred from Mutant Phenotype
more info
PubMed 
spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011755.2NP_035885.2  zinc finger protein 271

    See identical proteins and their annotated locations for NP_035885.2

    Status: VALIDATED

    Source sequence(s)
    AC126807, BB614371
    Consensus CDS
    CCDS29097.1
    UniProtKB/Swiss-Prot
    P15620
    UniProtKB/TrEMBL
    Q3V142
    Related
    ENSMUSP00000074475.7, OTTMUSP00000045828, ENSMUST00000074941.7, OTTMUST00000084942
    Conserved Domains (3) summary
    COG5048
    Location:102489
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:106126
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:230255
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

    Range
    23989634..24005371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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