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Zfp28 zinc finger protein 28 [ Mus musculus (house mouse) ]

Gene ID: 22690, updated on 3-Jun-2018
Official Symbol
Zfp28provided by MGI
Official Full Name
zinc finger protein 28provided by MGI
Primary source
MGI:MGI:99175
See related
Ensembl:ENSMUSG00000062861 Vega:OTTMUSG00000060101
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mkr-5; Zfp-28; 2810438M17Rik
Expression
Broad expression in CNS E18 (RPKM 4.3), CNS E14 (RPKM 3.9) and 24 other tissues See more
Orthologs
See Zfp28 in Genome Data Viewer
Location:
7; 7 A1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (6383318..6396637)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (6336028..6349347)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 72 pseudogene Neighboring gene zinc finger protein 78 Neighboring gene uncharacterized LOC102640325 Neighboring gene small integral membrane protein 17

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
intracellular IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
zinc finger protein 28
Names
protein mKR5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175247.3NP_780456.2  zinc finger protein 28

    See identical proteins and their annotated locations for NP_780456.2

    Status: VALIDATED

    Source sequence(s)
    AK173170, AW488938, BY011080
    Consensus CDS
    CCDS39752.1
    UniProtKB/Swiss-Prot
    P10078
    UniProtKB/TrEMBL
    Q69ZJ8
    Related
    ENSMUSP00000079812.7, OTTMUSP00000076538, ENSMUST00000081022.8, OTTMUST00000147097
    Conserved Domains (6) summary
    smart00349
    Location:103163
    KRAB; krueppel associated box
    COG5048
    Location:341763
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:576596
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:377399
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:103142
    KRAB; KRAB box
    pfam13465
    Location:616641
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

    Range
    6383318..6396637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322133.1XP_017177622.1  zinc finger protein 28 isoform X1

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