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Ahctf1 AT hook containing transcription factor 1 [ Mus musculus (house mouse) ]

Gene ID: 226747, updated on 31-Jan-2019

Summary

Official Symbol
Ahctf1provided by MGI
Official Full Name
AT hook containing transcription factor 1provided by MGI
Primary source
MGI:MGI:1915033
See related
Ensembl:ENSMUSG00000026491
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Elys; AV011447; 6230412P20Rik
Expression
Ubiquitous expression in testis adult (RPKM 11.3), placenta adult (RPKM 10.3) and 25 other tissues See more
Orthologs

Genomic context

See Ahctf1 in Genome Data Viewer
Location:
1 H4; 1 83.62 cM
Exon count:
38
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (179744894..179804015, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (181675035..181734146, complement)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene consortin, connexin sorting protein Neighboring gene saccharopine dehydrogenase (putative) Neighboring gene kinesin family member 28 Neighboring gene predicted gene, 31668 Neighboring gene CDC42 binding protein kinase alpha Neighboring gene uncharacterized LOC108167749

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
hemopoiesis TAS
Traceable Author Statement
more info
PubMed 
mRNA transport IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
nuclear pore complex assembly ISO
Inferred from Sequence Orthology
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of cytokinesis ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
colocalizes_with chromatin ISO
Inferred from Sequence Orthology
more info
 
chromosome IEA
Inferred from Electronic Annotation
more info
 
chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with condensed chromosome kinetochore ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
kinetochore IEA
Inferred from Electronic Annotation
more info
 
nuclear matrix IDA
Inferred from Direct Assay
more info
PubMed 
nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with nuclear pore ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with nuclear pore outer ring ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein ELYS
Names
embryonic large molecule derived from yolk sac
putative AT-hook-containing transcription factor 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026375.2NP_080651.2  protein ELYS

    See identical proteins and their annotated locations for NP_080651.2

    Status: VALIDATED

    Source sequence(s)
    AC113977, AC122411
    Consensus CDS
    CCDS15564.1
    UniProtKB/Swiss-Prot
    Q8CJF7
    Related
    ENSMUSP00000027768.7, ENSMUST00000027768.13
    Conserved Domains (2) summary
    pfam13934
    Location:722947
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:2489
    ELYS-bb; beta-propeller of ELYS nucleoporin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    179744894..179804015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496800.3XP_006496863.1  protein ELYS isoform X1

    Conserved Domains (2) summary
    pfam13934
    Location:7941019
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:74561
    ELYS-bb; beta-propeller of ELYS nucleoporin

RNA

  1. XR_001784117.1 RNA Sequence

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