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Gm4836 predicted gene 4836 [ Mus musculus (house mouse) ]

Gene ID: 22526, updated on 26-Sep-2022

Summary

Official Symbol
Gm4836provided by MGI
Official Full Name
predicted gene 4836provided by MGI
Primary source
MGI:MGI:3809202
See related
Ensembl:ENSMUSG00000094624 AllianceGenome:MGI:3809202
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to human SYCP3 (synaptonemal complex protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 5.4) See more
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Genomic context

See Gm4836 in Genome Data Viewer
Location:
X A3.1; X
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (28051126..28074048, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (28270710..28293632, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted pseudogene 7391 Neighboring gene predicted gene, 42175 Neighboring gene predicted gene, 42176 Neighboring gene predicted gene 7398

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC107294, MGC118207

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 

General protein information

Preferred Names
Xlr-related, meiosis regulated

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009529.3NP_033555.1  Xlr-related, meiosis regulated

    See identical proteins and their annotated locations for NP_033555.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061169
    Consensus CDS
    CCDS30055.1
    UniProtKB/TrEMBL
    Q62478
    Related
    ENSMUSP00000137394.2, ENSMUST00000179874.2
    Conserved Domains (1) summary
    pfam04803
    Location:130209
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    28051126..28074048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)