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Gjd4 gap junction protein, delta 4 [ Mus musculus (house mouse) ]

Gene ID: 225152, updated on 27-Jan-2018

Summary

Official Symbol
Gjd4provided by MGI
Official Full Name
gap junction protein, delta 4provided by MGI
Primary source
MGI:MGI:2444990
See related
Ensembl:ENSMUSG00000036855
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cx39; 9430022F06Rik
Expression
Biased expression in limb E14.5 (RPKM 1.3), CNS E11.5 (RPKM 0.2) and 2 other tissues See more
Orthologs

Genomic context

See Gjd4 in Genome Data Viewer
Location:
18; 18 A1
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (9278607..9289808, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (9278605..9282807, complement)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene crumbs homolog 1 pseudogene Neighboring gene frizzled class receptor 8 Neighboring gene cyclin Y Neighboring gene predicted gene, 35458

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
cell communication IEA
Inferred from Electronic Annotation
more info
 
regulation of satellite cell activation involved in skeletal muscle regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
connexin complex IEA
Inferred from Electronic Annotation
more info
 
gap junction IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
gap junction delta-4 protein
Names
connexin-39
connexin39

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153086.5NP_694726.2  gap junction delta-4 protein

    See identical proteins and their annotated locations for NP_694726.2

    Status: PROVISIONAL

    Source sequence(s)
    AC108777
    Consensus CDS
    CCDS29049.1
    UniProtKB/Swiss-Prot
    Q8BSD4
    Related
    ENSMUSP00000035472.3, ENSMUST00000041007.3
    Conserved Domains (3) summary
    smart00037
    Location:4376
    CNX; Connexin homologues
    smart01089
    Location:132197
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:5198
    Connexin; Connexin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

    Range
    9278607..9289808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525809.2XP_006525872.1  gap junction delta-4 protein isoform X1

    Conserved Domains (3) summary
    smart00037
    Location:2154
    CNX; Connexin homologues
    smart01089
    Location:110175
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
    pfam00029
    Location:18176
    Connexin; Connexin
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