U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rrp36 ribosomal RNA processing 36 [ Mus musculus (house mouse) ]

Gene ID: 224823, updated on 26-Sep-2022

Summary

Official Symbol
Rrp36provided by MGI
Official Full Name
ribosomal RNA processing 36provided by MGI
Primary source
MGI:MGI:2385053
See related
Ensembl:ENSMUSG00000023971 AllianceGenome:MGI:2385053
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleoplasm. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Orthologous to human RRP36 (ribosomal RNA processing 36). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 14.7), ovary adult (RPKM 13.9) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Rrp36 in Genome Data Viewer
Location:
17; 17 C
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (46977249..46985252, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (46666323..46674326, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene kinesin light chain 4 Neighboring gene mitochondrial ribosomal protein L2 Neighboring gene cullin 7 Neighboring gene kelch domain containing 3 Neighboring gene male enhanced antigen 1 Neighboring gene protein phosphatase 2, regulatory subunit B', delta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC19067

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in cleavage involved in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
 
involved_in ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ribosomal RNA processing protein 36 homolog
Names
RNA processing factor
ribosomal RNA processing 36 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368622.1NP_001355551.1  ribosomal RNA processing protein 36 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT030702
    Conserved Domains (1) summary
    pfam06102
    Location:41195
    RRP36; rRNA biogenesis protein RRP36
  2. NM_144857.2NP_659106.2  ribosomal RNA processing protein 36 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    BE647409, BQ833497, CT030702
    Consensus CDS
    CCDS37639.2
    UniProtKB/TrEMBL
    A0A3B2WB30
    Related
    ENSMUSP00000156646.2, ENSMUST00000233136.2
    Conserved Domains (1) summary
    pfam06102
    Location:76230
    RRP36; rRNA biogenesis protein RRP36

RNA

  1. NR_160853.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BE647409, BQ833497, CT030702

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    46977249..46985252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)