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Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 [ Mus musculus (house mouse) ]

Gene ID: 224742, updated on 19-Apr-2019

Summary

Official Symbol
Abcf1provided by MGI
Official Full Name
ATP-binding cassette, sub-family F (GCN20), member 1provided by MGI
Primary source
MGI:MGI:1351658
See related
Ensembl:ENSMUSG00000038762
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Abc50; GCN20; AU041969; D17Wsu166e
Expression
Ubiquitous expression in testis adult (RPKM 41.9), CNS E11.5 (RPKM 33.3) and 28 other tissues See more
Orthologs

Genomic context

See Abcf1 in Genome Data Viewer
Location:
17 B1; 17 18.8 cM
Exon count:
23
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (35956816..35969800, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (36093764..36106695, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene ring-box 1, pseudogene Neighboring gene protein phosphatase 1, regulatory subunit 10 pseudogene Neighboring gene microRNA 877 Neighboring gene predicted gene, 32655 Neighboring gene proline-rich polypeptide 3 Neighboring gene guanine nucleotide binding protein-like 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATP binding ISO
Inferred from Sequence Orthology
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
ribosome binding ISO
Inferred from Sequence Orthology
more info
 
translation activator activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
positive regulation of translation ISO
Inferred from Sequence Orthology
more info
 
translational initiation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nuclear envelope ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
ribosome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ATP-binding cassette sub-family F member 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013854.1NP_038882.1  ATP-binding cassette sub-family F member 1

    See identical proteins and their annotated locations for NP_038882.1

    Status: VALIDATED

    Source sequence(s)
    BC063094
    Consensus CDS
    CCDS28713.1
    UniProtKB/Swiss-Prot
    Q6P542
    Related
    ENSMUSP00000036881.8, ENSMUST00000043757.14
    Conserved Domains (2) summary
    cd03221
    Location:296517
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:294825
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

    Range
    35956816..35969800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006524122.2XP_006524185.2  ATP-binding cassette sub-family F member 1 isoform X1

    Conserved Domains (2) summary
    cd03221
    Location:324545
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:322853
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Reference GRCm38.p4 NOD/MrkTac

Genomic

  1. NT_187027.1 Reference GRCm38.p4 NOD/MrkTac

    Range
    2266566..2279488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 NOD/ShiLtJ

Genomic

  1. NT_187004.1 Reference GRCm38.p4 NOD/ShiLtJ

    Range
    2290188..2303110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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