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Xlr3a X-linked lymphocyte-regulated 3A [ Mus musculus (house mouse) ]

Gene ID: 22445, updated on 26-Sep-2022

Summary

Official Symbol
Xlr3aprovided by MGI
Official Full Name
X-linked lymphocyte-regulated 3Aprovided by MGI
Primary source
MGI:MGI:109506
See related
Ensembl:ENSMUSG00000057836 AllianceGenome:MGI:109506
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Xlr3
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be located in nucleoplasm. Predicted to be active in synaptonemal complex. Is expressed in several structures, including alimentary system; blood; central nervous system; female reproductive system; and sensory organ. Orthologous to several human genes including FAM9C (family with sequence similarity 9 member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in placenta adult (RPKM 19.3), liver E18 (RPKM 4.2) and 6 other tissues See more
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Genomic context

See Xlr3a in Genome Data Viewer
Location:
X A7.3; X 37.29 cM
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (72129899..72140701, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (73086293..73097095, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene paraneoplastic antigen MA3 Neighboring gene X-linked lymphocyte-regulated 4A Neighboring gene X-linked lymphocyte-regulated 5A Neighboring gene PWWP domain containing 4A Neighboring gene PWWP domain containing 4B Neighboring gene X-linked lymphocyte-regulated 5B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Clone Names

  • MGC102490, MGC130195, MGC130233, MGC156362, MGC156363

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
X-linked lymphocyte-regulated protein 3A
Names
X-linked B-cell surface antigen 3a
X-linked lymphocyte regulated 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110784.1NP_001104254.1  X-linked lymphocyte-regulated protein 3A

    See identical proteins and their annotated locations for NP_001104254.1

    Status: VALIDATED

    Source sequence(s)
    AW556788, BC107255, BQ885410, BX813330, CJ302076, DV662513
    Consensus CDS
    CCDS53092.1
    UniProtKB/TrEMBL
    Q99L59
    Related
    ENSMUSP00000074199.6, ENSMUST00000074619.6
    Conserved Domains (1) summary
    pfam04803
    Location:72187
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    72129899..72140701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247556.1XP_011245858.1  X-linked lymphocyte-regulated protein 3A isoform X1

    See identical proteins and their annotated locations for XP_011245858.1

    UniProtKB/Swiss-Prot
    Q60595
    UniProtKB/TrEMBL
    Q78PE0
    Related
    ENSMUSP00000110170.3, ENSMUST00000114524.9
    Conserved Domains (1) summary
    pfam04803
    Location:75203
    Cor1; Cor1/Xlr/Xmr conserved region
  2. XM_011247557.1XP_011245859.1  X-linked lymphocyte-regulated protein 3A isoform X1

    See identical proteins and their annotated locations for XP_011245859.1

    UniProtKB/Swiss-Prot
    Q60595
    UniProtKB/TrEMBL
    Q78PE0
    Conserved Domains (1) summary
    pfam04803
    Location:75203
    Cor1; Cor1/Xlr/Xmr conserved region
  3. XM_011247559.1XP_011245861.1  X-linked lymphocyte-regulated protein 3A isoform X3

    See identical proteins and their annotated locations for XP_011245861.1

    Conserved Domains (1) summary
    pfam04803
    Location:1116
    Cor1; Cor1/Xlr/Xmr conserved region
  4. XM_011247558.3XP_011245860.1  X-linked lymphocyte-regulated protein 3A isoform X2

    See identical proteins and their annotated locations for XP_011245860.1

    Conserved Domains (1) summary
    pfam04803
    Location:75179
    Cor1; Cor1/Xlr/Xmr conserved region

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_011726.1: Suppressed sequence

    Description
    NM_011726.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.