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Itgbl1 integrin, beta-like 1 [ Mus musculus (house mouse) ]

Gene ID: 223272, updated on 8-Dec-2018

Summary

Official Symbol
Itgbl1provided by MGI
Official Full Name
integrin, beta-like 1provided by MGI
Primary source
MGI:MGI:2443439
See related
Ensembl:ENSMUSG00000032925
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B930011D01Rik
Expression
Broad expression in genital fat pad adult (RPKM 5.6), bladder adult (RPKM 5.3) and 17 other tissues See more
Orthologs

Genomic context

See Itgbl1 in Genome Data Viewer
Location:
14; 14 E5
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (123659936..123974080)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (124059362..124373301)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene sodium leak channel, non-selective Neighboring gene pericentriolar material 1 pseudogene Neighboring gene predicted gene, 46490 Neighboring gene predicted gene 9308 Neighboring gene RIKEN cDNA 1700024B18 gene Neighboring gene predicted gene 15422 Neighboring gene fibroblast growth factor 14

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
integrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell adhesion mediated by integrin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-matrix adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integrin-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space HDA PubMed 
focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integrin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
integrin beta-like protein 1
Names
with EGF-like repeat domains

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145467.2NP_663442.2  integrin beta-like protein 1 precursor

    See identical proteins and their annotated locations for NP_663442.2

    Status: VALIDATED

    Source sequence(s)
    AK029068, BB676110, CJ154777
    Consensus CDS
    CCDS27354.1
    UniProtKB/Swiss-Prot
    Q8VDV0
    Related
    ENSMUSP00000059019.7, ENSMUST00000049681.13

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

    Range
    123659936..123974080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518921.3XP_006518984.1  integrin beta-like protein 1 isoform X1

    Related
    ENSMUSP00000115455.1, ENSMUST00000132026.1
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