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Vmn1r45 vomeronasal 1 receptor 45 [ Mus musculus (house mouse) ]

Gene ID: 22297, updated on 27-Nov-2024

Summary

Official Symbol
Vmn1r45provided by MGI
Official Full Name
vomeronasal 1 receptor 45provided by MGI
Primary source
MGI:MGI:1333762
See related
Ensembl:ENSMUSG00000044248 AllianceGenome:MGI:1333762
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1r2; V1RA9; V1ra2; mV1R2; V1ra11
Summary
Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Vmn1r45 in Genome Data Viewer
Location:
6 D1; 6 40.02 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (89908632..89917489, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (89931650..89940507, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 44 Neighboring gene vomeronasal 1 receptor, pseudogene 28 Neighboring gene STARR-seq mESC enhancer starr_16608 Neighboring gene vomeronasal 1 receptor 46 Neighboring gene vomeronasal 1 receptor, pseudogene 29

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in response to pheromone IEA
Inferred from Electronic Annotation
more info
 
involved_in sensory perception of chemical stimulus IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vomeronasal type-1 receptor 45
Names
pheromone receptor 2
vomeronasal 1 receptor Vmn1r45
vomeronasal 1 receptor, A2
vomeronasal 1, receptor 2
vomeronasal organ family 1, receptor 2
vomeronasal receptor 1 A9
vomeronasal receptor V1RA11
vomeronasal type-1 receptor A2
vomeronasal type-1 receptor A9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011684.2NP_035814.2  vomeronasal type-1 receptor 45

    See identical proteins and their annotated locations for NP_035814.2

    Status: VALIDATED

    Source sequence(s)
    AC080144
    Consensus CDS
    CCDS39559.1
    UniProtKB/Swiss-Prot
    Q8R2E6, Q8VIC7, Q9Z196
    Related
    ENSMUSP00000052123.4, ENSMUST00000054202.5
    Conserved Domains (1) summary
    pfam03402
    Location:54317
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    89908632..89917489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)