U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Vmn1r51 vomeronasal 1 receptor 51 [ Mus musculus (house mouse) ]

Gene ID: 22296, updated on 26-Sep-2022

Summary

Official Symbol
Vmn1r51provided by MGI
Official Full Name
vomeronasal 1 receptor 51provided by MGI
Primary source
MGI:MGI:1333759
See related
Ensembl:ENSMUSG00000062818 AllianceGenome:MGI:1333759
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1R; V1r1; VN12; V1ra1; mV1R1
Summary
Predicted to enable pheromone receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and response to pheromone. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Vmn1r51 in Genome Data Viewer
Location:
6; 6 D1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90099625..90107627)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90122643..90130645)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1, receptor 49 Neighboring gene vomeronasal 1 receptor 50 Neighboring gene TSR1 20S rRNA accumulation pseudogene Neighboring gene vomeronasal 1 receptor, pseudogene 32 Neighboring gene vomeronasal 1 receptor 52

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables pheromone receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within response to pheromone IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vomeronasal type-1 receptor 51
Names
pheromone receptor 1
vomeronasal 1 receptor Vmn1r51
vomeronasal 1 receptor, A1
vomeronasal 1, receptor 1
vomeronasal organ family 1, receptor 1
vomeronasal receptor V1RA1
vomeronasal type 1 receptor A1
vomeronasal type-1 receptor A8

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011683.2NP_035813.2  vomeronasal type-1 receptor 51

    See identical proteins and their annotated locations for NP_035813.2

    Status: VALIDATED

    Source sequence(s)
    BC046308, BY430696
    Consensus CDS
    CCDS39560.1
    UniProtKB/Swiss-Prot
    Q8VIC6
    UniProtKB/TrEMBL
    A0A0R4J266, F6MA16, Q78GE8
    Related
    ENSMUSP00000133870.2, ENSMUST00000174204.3
    Conserved Domains (1) summary
    pfam03402
    Location:64328
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    90099625..90107627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)