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FAM217A family with sequence similarity 217 member A [ Homo sapiens (human) ]

Gene ID: 222826, updated on 23-Nov-2021

Summary

Official Symbol
FAM217Aprovided by HGNC
Official Full Name
family with sequence similarity 217 member Aprovided by HGNC
Primary source
HGNC:HGNC:21362
See related
Ensembl:ENSG00000145975
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf146
Expression
Restricted expression toward testis (RPKM 7.9) See more
Orthologs
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Genomic context

See FAM217A in Genome Data Viewer
Location:
6p25.2
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (4050333..4087344, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (4068601..4079371, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene teratocarcinoma-derived growth factor 1 pseudogene 4 Neighboring gene glutaredoxin 3 pseudogene 2 Neighboring gene pre-mRNA processing factor 4B Neighboring gene Sharpr-MPRA regulatory region 2502 Neighboring gene protein MGC87625 Neighboring gene Sharpr-MPRA regulatory region 9692 Neighboring gene enoyl-CoA delta isomerase 2 Neighboring gene uncharacterized LOC107986559 Neighboring gene ECI2 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC43581

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
protein FAM217A
Names
uncharacterized protein C6orf146

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173563.3NP_775834.2  protein FAM217A

    See identical proteins and their annotated locations for NP_775834.2

    Status: VALIDATED

    Source sequence(s)
    AL033383, BC039349
    Consensus CDS
    CCDS4489.1
    UniProtKB/Swiss-Prot
    Q8IXS0
    Related
    ENSP00000274673.3, ENST00000274673.8
    Conserved Domains (1) summary
    pfam15344
    Location:203400
    FAM217; FAM217 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    4050333..4087344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024446356.1XP_024302124.1  protein FAM217A isoform X7

  2. XM_017010482.1XP_016865971.1  protein FAM217A isoform X6

    UniProtKB/TrEMBL
    A0A024QZY6
    Related
    ENST00000380188.2
    Conserved Domains (1) summary
    pfam15344
    Location:140337
    FAM217; FAM217 family
  3. XM_011514415.1XP_011512717.1  protein FAM217A isoform X3

    Conserved Domains (1) summary
    pfam15344
    Location:193390
    FAM217; FAM217 family
  4. XM_011514414.3XP_011512716.1  protein FAM217A isoform X6

    See identical proteins and their annotated locations for XP_011512716.1

    UniProtKB/TrEMBL
    A0A024QZY6
    Conserved Domains (1) summary
    pfam15344
    Location:140337
    FAM217; FAM217 family
  5. XM_006715025.3XP_006715088.1  protein FAM217A isoform X6

    See identical proteins and their annotated locations for XP_006715088.1

    UniProtKB/TrEMBL
    A0A024QZY6
    Conserved Domains (1) summary
    pfam15344
    Location:140337
    FAM217; FAM217 family
  6. XM_011514417.2XP_011512719.1  protein FAM217A isoform X5

    Conserved Domains (1) summary
    pfam15344
    Location:155352
    FAM217; FAM217 family
  7. XM_005248951.4XP_005249008.1  protein FAM217A isoform X2

    Conserved Domains (1) summary
    pfam15344
    Location:194391
    FAM217; FAM217 family
  8. XM_011514416.2XP_011512718.1  protein FAM217A isoform X4

    Conserved Domains (1) summary
    pfam15344
    Location:190387
    FAM217; FAM217 family
  9. XM_017010481.1XP_016865970.1  protein FAM217A isoform X2

    Conserved Domains (1) summary
    pfam15344
    Location:194391
    FAM217; FAM217 family
  10. XM_017010480.2XP_016865969.1  protein FAM217A isoform X1

  11. XM_006715026.3XP_006715089.1  protein FAM217A isoform X6

    See identical proteins and their annotated locations for XP_006715089.1

    UniProtKB/TrEMBL
    A0A024QZY6
    Conserved Domains (1) summary
    pfam15344
    Location:140337
    FAM217; FAM217 family
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