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SLC35F1 solute carrier family 35 member F1 [ Homo sapiens (human) ]

Gene ID: 222553, updated on 6-Jan-2023

Summary

Official Symbol
SLC35F1provided by HGNC
Official Full Name
solute carrier family 35 member F1provided by HGNC
Primary source
HGNC:HGNC:21483
See related
Ensembl:ENSG00000196376 AllianceGenome:HGNC:21483
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf169; dJ230I3.1
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Note: This gene has been reviewed for its involvement in coronavirus biology, and is locus in the vicinity of disease-associated variant(s).
Expression
Biased expression in brain (RPKM 17.3), heart (RPKM 1.2) and 1 other tissue See more
Orthologs
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Genomic context

See SLC35F1 in Genome Data Viewer
Location:
6q22.2-q22.31
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (117907264..118317671)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (119091523..119502777)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (118228427..118638834)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit Neighboring gene uncharacterized LOC124901480 Neighboring gene ribosomal protein L29 pseudogene 4 Neighboring gene uncharacterized LOC105377967 Neighboring gene uncharacterized LOC107986523 Neighboring gene uncharacterized LOC124901387 Neighboring gene uncharacterized LOC105377971 Neighboring gene ATP-dependent RNA helicase DDX24-like Neighboring gene centrosomal protein 85 like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide association studies.
EBI GWAS Catalog
Common variants at ten loci influence QT interval duration in the QTGEN Study.
EBI GWAS Catalog
Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
EBI GWAS Catalog
Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
EBI GWAS Catalog
Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.
EBI GWAS Catalog
Genome-wide association analysis identifies multiple loci related to resting heart rate.
EBI GWAS Catalog
Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13018

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 35 member F1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029858.4NP_001025029.2  solute carrier family 35 member F1

    See identical proteins and their annotated locations for NP_001025029.2

    Status: VALIDATED

    Source sequence(s)
    AL133379, AL136478, AL449196, Z95326
    Consensus CDS
    CCDS34524.1
    UniProtKB/Swiss-Prot
    Q5T1Q4, Q6N007
    Related
    ENSP00000353557.4, ENST00000360388.9
    Conserved Domains (1) summary
    pfam06027
    Location:56355
    SLC35F; Solute carrier family 35
  2. NM_001415931.1NP_001402860.1  solute carrier family 35 member F1

    Status: VALIDATED

    Source sequence(s)
    AL133379, AL136478, AL449196, Z95326

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    117907264..118317671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005266865.5XP_005266922.1  solute carrier family 35 member F1 isoform X1

    UniProtKB/Swiss-Prot
    Q5T1Q4, Q6N007
    Conserved Domains (1) summary
    pfam06027
    Location:56355
    SLC35F; Solute carrier family 35

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    119091523..119502777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)