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ATXN7L1 ataxin 7 like 1 [ Homo sapiens (human) ]

Gene ID: 222255, updated on 13-Aug-2020

Summary

Official Symbol
ATXN7L1provided by HGNC
Official Full Name
ataxin 7 like 1provided by HGNC
Primary source
HGNC:HGNC:22210
See related
Ensembl:ENSG00000146776
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ATXN7L4
Expression
Ubiquitous expression in testis (RPKM 2.9), kidney (RPKM 1.4) and 24 other tissues See more
Orthologs

Genomic context

See ATXN7L1 in Genome Data Viewer
Location:
7q22.3
Exon count:
23
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (105604774..105877772, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (105244932..105517046, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 12225 Neighboring gene Y-box binding protein 1 pseudogene 2 Neighboring gene ribosomal protein L13a pseudogene 16 Neighboring gene cadherin related family member 3 Neighboring gene uncharacterized LOC107986833 Neighboring gene synaptophysin like 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.
NHGRI GWA Catalog
GWAS of dental caries patterns in the permanent dentition.
NHGRI GWA Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40255, FLJ58242, KIAA1218, MGC10760, MGC33190

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
ataxin-7-like protein 1
Names
ataxin 7-like 4
ataxin-7-like protein 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001318229.2NP_001305158.1  ataxin-7-like protein 1 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has multiple differences in the coding region and UTRs compared to variant 1. These differences result in the use of a downstream in-frame start codon and a distinct 3' coding region. The encoded isoform (4) has a shorter N-terminus and a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    BC003517, BC055009, BQ227169, BQ436521
    UniProtKB/TrEMBL
    Q9BTQ8
    Conserved Domains (1) summary
    pfam08313
    Location:61127
    SCA7; SCA7, zinc-binding domain
  2. NM_001385596.1NP_001372525.1  ataxin-7-like protein 1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC005099, AC007030, AC073073
  3. NM_020725.2NP_065776.1  ataxin-7-like protein 1 isoform 1

    See identical proteins and their annotated locations for NP_065776.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC005099, AC007030, AC073073
    Consensus CDS
    CCDS47682.1
    UniProtKB/Swiss-Prot
    Q9ULK2
    Related
    ENSP00000410759.3, ENST00000419735.7
    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  4. NM_138495.1NP_612504.1  ataxin-7-like protein 1 isoform 3

    See identical proteins and their annotated locations for NP_612504.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple differences in the 5' UTR and 5' coding region, compared to variant 1. These differences cause translation initiation at a downstream in-frame ATG and an isoform (3) with a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC073073, AK300338
    Consensus CDS
    CCDS47683.1
    UniProtKB/Swiss-Prot
    Q9ULK2
    Related
    ENSP00000418476.1
    Conserved Domains (1) summary
    pfam08313
    Location:153219
    SCA7; SCA7, zinc-binding domain
  5. NM_152749.3NP_689962.1  ataxin-7-like protein 1 isoform 2

    See identical proteins and their annotated locations for NP_689962.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon at its 3' coding region and 3' UTR and lacks all other 3' exons, compared to variant 1. This results in an isoform (2) with a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    BC030616, BP339600, BQ431139
    Consensus CDS
    CCDS34727.1
    UniProtKB/Swiss-Prot
    Q9ULK2
    Related
    ENSP00000326344.4, ENST00000318724.8

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    105604774..105877772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011515940.2XP_011514242.1  ataxin-7-like protein 1 isoform X11

    See identical proteins and their annotated locations for XP_011514242.1

    UniProtKB/Swiss-Prot
    Q9ULK2
    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  2. XM_005250220.4XP_005250277.1  ataxin-7-like protein 1 isoform X10

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  3. XM_011515939.2XP_011514241.1  ataxin-7-like protein 1 isoform X9

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  4. XM_011515935.2XP_011514237.1  ataxin-7-like protein 1 isoform X3

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  5. XM_006715901.3XP_006715964.1  ataxin-7-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006715964.1

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  6. XM_006715902.4XP_006715965.1  ataxin-7-like protein 1 isoform X7

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  7. XM_006715900.3XP_006715963.1  ataxin-7-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006715963.1

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  8. XM_017011860.2XP_016867349.1  ataxin-7-like protein 1 isoform X16

    Conserved Domains (1) summary
    pfam08313
    Location:842
    SCA7; SCA7, zinc-binding domain
  9. XM_011515946.1XP_011514248.1  ataxin-7-like protein 1 isoform X16

    See identical proteins and their annotated locations for XP_011514248.1

    Related
    ENSP00000418900.1, ENST00000484475.5
    Conserved Domains (1) summary
    pfam08313
    Location:842
    SCA7; SCA7, zinc-binding domain
  10. XM_011515944.1XP_011514246.1  ataxin-7-like protein 1 isoform X13

    See identical proteins and their annotated locations for XP_011514246.1

    Conserved Domains (1) summary
    pfam08313
    Location:153219
    SCA7; SCA7, zinc-binding domain
  11. XM_017011861.1XP_016867350.1  ataxin-7-like protein 1 isoform X16

    Conserved Domains (1) summary
    pfam08313
    Location:842
    SCA7; SCA7, zinc-binding domain
  12. XM_011515942.2XP_011514244.1  ataxin-7-like protein 1 isoform X13

    See identical proteins and their annotated locations for XP_011514244.1

    Conserved Domains (1) summary
    pfam08313
    Location:153219
    SCA7; SCA7, zinc-binding domain
  13. XM_006715904.3XP_006715967.1  ataxin-7-like protein 1 isoform X16

    See identical proteins and their annotated locations for XP_006715967.1

    Conserved Domains (1) summary
    pfam08313
    Location:842
    SCA7; SCA7, zinc-binding domain
  14. XM_011515943.2XP_011514245.1  ataxin-7-like protein 1 isoform X13

    See identical proteins and their annotated locations for XP_011514245.1

    Conserved Domains (1) summary
    pfam08313
    Location:153219
    SCA7; SCA7, zinc-binding domain
  15. XM_011515941.2XP_011514243.1  ataxin-7-like protein 1 isoform X13

    See identical proteins and their annotated locations for XP_011514243.1

    Conserved Domains (1) summary
    pfam08313
    Location:153219
    SCA7; SCA7, zinc-binding domain
  16. XM_011515936.2XP_011514238.1  ataxin-7-like protein 1 isoform X5

    Conserved Domains (1) summary
    pfam08313
    Location:211277
    SCA7; SCA7, zinc-binding domain
  17. XM_017011858.1XP_016867347.1  ataxin-7-like protein 1 isoform X4

  18. XM_011515947.1XP_011514249.1  ataxin-7-like protein 1 isoform X16

    See identical proteins and their annotated locations for XP_011514249.1

    Conserved Domains (1) summary
    pfam08313
    Location:842
    SCA7; SCA7, zinc-binding domain
  19. XM_011515945.1XP_011514247.1  ataxin-7-like protein 1 isoform X14

    See identical proteins and their annotated locations for XP_011514247.1

    UniProtKB/TrEMBL
    A4D0Q3
    Conserved Domains (1) summary
    pfam08313
    Location:61127
    SCA7; SCA7, zinc-binding domain
  20. XM_011515938.2XP_011514240.1  ataxin-7-like protein 1 isoform X8

    Conserved Domains (1) summary
    pfam08313
    Location:174240
    SCA7; SCA7, zinc-binding domain
  21. XM_011515937.3XP_011514239.1  ataxin-7-like protein 1 isoform X6

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  22. XM_017011859.1XP_016867348.1  ataxin-7-like protein 1 isoform X15

    Related
    ENSP00000419566.1, ENST00000472195.1
  23. XM_006715903.4XP_006715966.1  ataxin-7-like protein 1 isoform X12

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  24. XM_011515950.2XP_011514252.1  ataxin-7-like protein 1 isoform X17

    Conserved Domains (1) summary
    pfam08313
    Location:277343
    SCA7; SCA7, zinc-binding domain
  25. XM_011515954.3XP_011514256.1  ataxin-7-like protein 1 isoform X18

    See identical proteins and their annotated locations for XP_011514256.1

    UniProtKB/Swiss-Prot
    Q9ULK2

RNA

  1. XR_001744596.2 RNA Sequence

  2. XR_927411.2 RNA Sequence

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