Format

Send to:

Choose Destination

PRR15 proline rich 15 [ Homo sapiens (human) ]

Gene ID: 222171, updated on 13-Mar-2020

Summary

Official Symbol
PRR15provided by HGNC
Official Full Name
proline rich 15provided by HGNC
Primary source
HGNC:HGNC:22310
See related
Ensembl:ENSG00000176532 MIM:618344
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 29.0), small intestine (RPKM 15.6) and 6 other tissues See more
Orthologs

Genomic context

See PRR15 in Genome Data Viewer
Location:
7p14.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (29563835..29567300)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (29603039..29606911)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene chimerin 2 Neighboring gene Nanog homeobox pseudogene 4 Neighboring gene uncharacterized LOC107986700 Neighboring gene general transcription factor IIIC subunit 6 pseudogene Neighboring gene uncharacterized LOC105375213 Neighboring gene TMSB4X pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329996.2NP_001316925.1  proline-rich protein 15

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC007255
    Consensus CDS
    CCDS5421.1
    UniProtKB/Swiss-Prot
    Q8IV56
    UniProtKB/TrEMBL
    A4D1A1
    Conserved Domains (1) summary
    pfam15321
    Location:13109
    ATAD4; ATPase family AAA domain containing 4
  2. NM_001329997.1NP_001316926.1  proline-rich protein 15

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
    Source sequence(s)
    AC007255
    Consensus CDS
    CCDS5421.1
    UniProtKB/Swiss-Prot
    Q8IV56
    UniProtKB/TrEMBL
    A4D1A1
    Conserved Domains (1) summary
    pfam15321
    Location:13109
    ATAD4; ATPase family AAA domain containing 4
  3. NM_175887.3NP_787083.1  proline-rich protein 15

    See identical proteins and their annotated locations for NP_787083.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
    Source sequence(s)
    BC029131
    Consensus CDS
    CCDS5421.1
    UniProtKB/Swiss-Prot
    Q8IV56
    UniProtKB/TrEMBL
    A4D1A1
    Related
    ENSP00000317836.2, ENST00000319694.3
    Conserved Domains (1) summary
    pfam15321
    Location:13109
    ATAD4; ATPase family AAA domain containing 4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    29563835..29567300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011515198.1XP_011513500.1  proline-rich protein 15 isoform X1

    See identical proteins and their annotated locations for XP_011513500.1

    UniProtKB/Swiss-Prot
    Q8IV56
    UniProtKB/TrEMBL
    A4D1A1
    Conserved Domains (1) summary
    pfam15321
    Location:13109
    ATAD4; ATPase family AAA domain containing 4
  2. XM_011515199.1XP_011513501.1  proline-rich protein 15 isoform X1

    See identical proteins and their annotated locations for XP_011513501.1

    UniProtKB/Swiss-Prot
    Q8IV56
    UniProtKB/TrEMBL
    A4D1A1
    Conserved Domains (1) summary
    pfam15321
    Location:13109
    ATAD4; ATPase family AAA domain containing 4
Support Center