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Ubc ubiquitin C [ Mus musculus (house mouse) ]

Gene ID: 22190, updated on 25-Sep-2020

Summary

Official Symbol
Ubcprovided by MGI
Official Full Name
ubiquitin Cprovided by MGI
Primary source
MGI:MGI:98889
See related
Ensembl:ENSMUSG00000008348
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ubb; Uba52; Rps27a; TI-225; AI194771; 2700054O04Rik
Expression
Ubiquitous expression in subcutaneous fat pad adult (RPKM 4219.9), ovary adult (RPKM 3990.3) and 28 other tissues See more
Orthologs

Genomic context

See Ubc in Genome Data Viewer
Location:
5 G1.1; 5 64.18 cM
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (125463029..125467081, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (125385965..125390017, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (125866335..125870387, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40323 Neighboring gene predicted gene, 40324 Neighboring gene predicted gene 10382 Neighboring gene VISTA enhancer mm1607 Neighboring gene nuclear encoded tRNA alanine 10 (anticodon TGC)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protease binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein tag IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol TAS
Traceable Author Statement
more info
 
myelin sheath HDA PubMed 
nucleoplasm TAS
Traceable Author Statement
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
polyubiquitin-C
Names
polyubiquitin C

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019639.4NP_062613.3  polyubiquitin-C

    See identical proteins and their annotated locations for NP_062613.3

    Status: VALIDATED

    Source sequence(s)
    AC138613, AI839133, CF172065
    Consensus CDS
    CCDS19684.2
    UniProtKB/Swiss-Prot
    P0CG50
    Related
    ENSMUSP00000115578.1, ENSMUST00000156249.1
    Conserved Domains (3) summary
    cd01803
    Location:77152
    Ubiquitin; Ubiquitin
    smart00213
    Location:172
    UBQ; Ubiquitin homologues
    cl00155
    Location:685713
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    125463029..125467081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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