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ZBTB9 zinc finger and BTB domain containing 9 [ Homo sapiens (human) ]

Gene ID: 221504, updated on 12-Aug-2022

Summary

Official Symbol
ZBTB9provided by HGNC
Official Full Name
zinc finger and BTB domain containing 9provided by HGNC
Primary source
HGNC:HGNC:28323
See related
Ensembl:ENSG00000213588 AllianceGenome:HGNC:28323
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF919
Summary
Enables identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 5.2), ovary (RPKM 3.9) and 25 other tissues See more
Orthologs
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Genomic context

See ZBTB9 in Genome Data Viewer
Location:
6p21.32
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (33453083..33457544)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (33275939..33278907)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (33422353..33425321)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene SYNGAP1 antisense RNA 1 Neighboring gene microRNA 5004 Neighboring gene uncharacterized LOC107986537 Neighboring gene RNA, 7SL, cytoplasmic 26, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC23166

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger and BTB domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152735.4NP_689948.1  zinc finger and BTB domain-containing protein 9

    See identical proteins and their annotated locations for NP_689948.1

    Status: VALIDATED

    Source sequence(s)
    AK122644, AL662799, BC014978, BX488390
    Consensus CDS
    CCDS4780.1
    UniProtKB/Swiss-Prot
    A2AB19, Q96C00
    UniProtKB/TrEMBL
    A0A1U9X8U5
    Related
    ENSP00000378503.2, ENST00000395064.3
    Conserved Domains (3) summary
    sd00017
    Location:388405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:413433
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:38140
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    33453083..33457544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047418350.1XP_047274306.1  zinc finger and BTB domain-containing protein 9 isoform X1

    UniProtKB/Swiss-Prot
    A2AB19
    UniProtKB/TrEMBL
    A0A1U9X8U5

Reference GRCh38.p14 ALT_REF_LOCI_7

Genomic

  1. NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7

    Range
    4903299..4906267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    33275939..33278907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)