Format

Send to:

Choose Destination

C6orf223 chromosome 6 open reading frame 223 [ Homo sapiens (human) ]

Gene ID: 221416, updated on 15-Jun-2019

Summary

Official Symbol
C6orf223provided by HGNC
Official Full Name
chromosome 6 open reading frame 223provided by HGNC
Primary source
HGNC:HGNC:28692
See related
Ensembl:ENSG00000181577
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lung (RPKM 1.6), duodenum (RPKM 0.5) and 11 other tissues See more
Orthologs

Genomic context

See C6orf223 in Genome Data Viewer
Location:
6p21.1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (43999515..44007615)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (43968337..43973695)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986598 Neighboring gene uncharacterized LOC105375068 Neighboring gene uncharacterized LOC105375067 Neighboring gene long intergenic non-protein coding RNA 1512 Neighboring gene uncharacterized LOC101929705 Neighboring gene ribosomal protein L29 pseudogene 16 Neighboring gene mitochondrial ribosomal protein L14 Neighboring gene transmembrane protein 63B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Other Names

  • uncharacterized protein C6orf223

Clone Names

  • MGC45491

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160954.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109615
  2. NR_160955.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109615
  3. NR_160956.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109615

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    44000585..44007612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001171992.2: Suppressed sequence

    Description
    NM_001171992.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001324369.1: Suppressed sequence

    Description
    NM_001324369.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_153246.6: Suppressed sequence

    Description
    NM_153246.6: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Support Center