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SPATS1 spermatogenesis associated serine rich 1 [ Homo sapiens (human) ]

Gene ID: 221409, updated on 23-Nov-2021

Summary

Official Symbol
SPATS1provided by HGNC
Official Full Name
spermatogenesis associated serine rich 1provided by HGNC
Primary source
HGNC:HGNC:22957
See related
Ensembl:ENSG00000249481
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DDIP; SRSP1; SPATA8
Expression
Restricted expression toward testis (RPKM 12.6) See more
Orthologs
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Genomic context

See SPATS1 in Genome Data Viewer
Location:
6p21.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (44342650..44380179)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (44310387..44347916)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RNA polymerase I and III subunit C Neighboring gene transmembrane protein 151B Neighboring gene t-complex-associated-testis-expressed 1 Neighboring gene alanyl-tRNA synthetase 2, mitochondrial Neighboring gene CRISPRi-validated cis-regulatory element chr6.3216 Neighboring gene cell division cycle 5 like Neighboring gene microRNA 4642

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25442, MGC119210, MGC119211, MGC119212, MGC119213, MGC133020

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
spermatogenesis-associated serine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001372081.1NP_001359010.1  spermatogenesis-associated serine-rich protein 1

    Status: VALIDATED

    Source sequence(s)
    AL353588
    Related
    ENSP00000501191.1, ENST00000674044.1
    Conserved Domains (1) summary
    pfam15160
    Location:51286
    SASRP1; Spermatogenesis-associated serine-rich protein 1
  2. NM_145026.4NP_659463.1  spermatogenesis-associated serine-rich protein 1

    See identical proteins and their annotated locations for NP_659463.1

    Status: VALIDATED

    Source sequence(s)
    AL353588
    Consensus CDS
    CCDS4911.1
    UniProtKB/Swiss-Prot
    Q496A3
    Related
    ENSP00000437552.1, ENST00000323108.12
    Conserved Domains (1) summary
    pfam15160
    Location:51286
    SASRP1; Spermatogenesis-associated serine-rich protein 1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    44342650..44380179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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