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OPN5 opsin 5 [ Homo sapiens (human) ]

Gene ID: 221391, updated on 22-Sep-2022

Summary

Official Symbol
OPN5provided by HGNC
Official Full Name
opsin 5provided by HGNC
Primary source
HGNC:HGNC:19992
See related
Ensembl:ENSG00000124818 MIM:609042; AllianceGenome:HGNC:19992
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PGR12; GPR136; GRP136; TMEM13
Summary
Opsins are members of the guanine nucleotide-binding protein (G protein)-coupled receptor superfamily. This opsin gene is expressed in the eye, brain, testes, and spinal cord. This gene belongs to the seven-exon subfamily of mammalian opsin genes that includes peropsin (RRH) and retinal G protein coupled receptor (RGR). Like these other seven-exon opsin genes, this family member may encode a protein with photoisomerase activity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]
Expression
Restricted expression toward testis (RPKM 1.6) See more
Orthologs
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Genomic context

See OPN5 in Genome Data Viewer
Location:
6p12.3
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (47782032..47826381)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (47623816..47668165)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (47749768..47794117)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor F4 Neighboring gene RN7SK pseudogene 116 Neighboring gene ribosomal protein L27a pseudogene 7 Neighboring gene RNA, U1 small nuclear 105, pseudogene Neighboring gene uncharacterized LOC107986601 Neighboring gene patched domain containing 4 Neighboring gene Sharpr-MPRA regulatory region 3755

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables 11-cis retinal binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables G protein-coupled photoreceptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables G protein-coupled photoreceptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cellular response to UV-A IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cellular response to light stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cellular response to light stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in detection of visible light IEA
Inferred from Electronic Annotation
more info
 
involved_in entrainment of circadian clock by photoperiod ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in hyaloid vascular plexus regression ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in phototransduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in phototransduction ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in phototransduction, UV IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
opsin-5
Names
G-protein coupled receptor 136
neuropsin
transmembrane protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_181744.4NP_859528.1  opsin-5

    See identical proteins and their annotated locations for NP_859528.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript but encodes the supported protein.
    Source sequence(s)
    AL161622, AL356421
    Consensus CDS
    CCDS4923.1
    UniProtKB/Swiss-Prot
    Q6U736, Q86SL5
    Related
    ENSP00000360255.2, ENST00000371211.7
    Conserved Domains (1) summary
    cd15074
    Location:34316
    7tmA_Opsin5_neuropsin; neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled receptors

RNA

  1. NR_033806.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks two 5' exons but includes a different 5' exon, and also contains an additional internal exon, compared to variant 1. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    BC042544, BX647224, DB056067
    Related
    ENST00000244799.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    47782032..47826381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010416.2XP_016865905.1  opsin-5 isoform X6

  2. XM_017010410.2XP_016865899.1  opsin-5 isoform X1

  3. XM_017010411.2XP_016865900.1  opsin-5 isoform X2

  4. XM_017010413.2XP_016865902.1  opsin-5 isoform X3

  5. XM_017010412.2XP_016865901.1  opsin-5 isoform X3

  6. XM_047418325.1XP_047274281.1  opsin-5 isoform X5

  7. XM_017010414.2XP_016865903.1  opsin-5 isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    47623816..47668165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001030051.1: Suppressed sequence

    Description
    NM_001030051.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.