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GTSCR1 Gilles de la Tourette syndrome chromosome region, candidate 1 [ Homo sapiens (human) ]

Gene ID: 220158, updated on 22-Sep-2022

Summary

Official Symbol
GTSCR1provided by HGNC
Official Full Name
Gilles de la Tourette syndrome chromosome region, candidate 1provided by HGNC
Primary source
HGNC:HGNC:18406
See related
Ensembl:ENSG00000263417 AllianceGenome:HGNC:18406
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See GTSCR1 in Genome Data Viewer
Location:
18q22.2
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (70630519..70650954, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (70852251..70872711, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (68297755..68318190, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376872 Neighboring gene RNA, 7SL, cytoplasmic 795, pseudogene Neighboring gene uncharacterized LOC124904322 Neighboring gene uncharacterized LOC105372185

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Other Names

  • Gilles de la Tourette syndrome chromosomal region candidate gene 1 protein
  • Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160904.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091646
    Related
    ENST00000582578.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    70630519..70650954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    70852251..70872711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001278515.1: Suppressed sequence

    Description
    NM_001278515.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
  2. NM_178506.2: Suppressed sequence

    Description
    NM_178506.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.