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KCNJ5-AS1 KCNJ5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 219833, updated on 23-Nov-2021

Summary

Official Symbol
KCNJ5-AS1provided by HGNC
Official Full Name
KCNJ5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:28584
See related
Ensembl:ENSG00000174370
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C11orf45
Expression
Ubiquitous expression in skin (RPKM 2.2), esophagus (RPKM 0.9) and 23 other tissues See more
Orthologs
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Genomic context

See KCNJ5-AS1 in Genome Data Viewer
Location:
11q24.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (128899565..128906231, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (128769460..128776126, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA Neighboring gene Fli-1 proto-oncogene, ETS transcription factor Neighboring gene uncharacterized LOC107984409 Neighboring gene potassium inwardly rectifying channel subfamily J member 1 Neighboring gene potassium inwardly rectifying channel subfamily J member 5 Neighboring gene tumor protein p53 regulated apoptosis inducing protein 1 Neighboring gene Rho GTPase activating protein 32 Neighboring gene RNA, U6 small nuclear 876, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ43646, MGC35558

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045767.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK125634, BC025756, BX956612
  2. NR_169215.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000920
  3. NR_169216.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000920
    Related
    ENST00000310799.9
  4. NR_169217.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000920

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    128899565..128906231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001256088.1: Suppressed sequence

    Description
    NM_001256088.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001369160.1: Suppressed sequence

    Description
    NM_001369160.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_145013.2: Suppressed sequence

    Description
    NM_145013.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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