Format

Send to:

Choose Destination

TYSND1 trypsin domain containing 1 [ Homo sapiens (human) ]

Gene ID: 219743, updated on 17-Jun-2019

Summary

Official Symbol
TYSND1provided by HGNC
Official Full Name
trypsin domain containing 1provided by HGNC
Primary source
HGNC:HGNC:28531
See related
Ensembl:ENSG00000156521 MIM:611017
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NET41
Summary
This gene encodes a protease that removes the N-terminal peroxisomal targeting signal (PTS2) from proteins produced in the cytosol, thereby facilitating their import into the peroxisome. The encoded protein is also capable of removing the C-terminal peroxisomal targeting signal (PTS1) from proteins in the peroxisomal matrix. The full-length protein undergoes self-cleavage to produce shorter, potentially inactive, peptides. Alternative splicing results in multiple transcript variants for this gene. [provided by RefSeq, Jan 2013]
Expression
Broad expression in testis (RPKM 9.5), skin (RPKM 5.4) and 25 other tissues See more
Orthologs

Genomic context

See TYSND1 in Genome Data Viewer
Location:
10q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (70137981..70146740, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (71897737..71906496, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H2A histone family member Y2 Neighboring gene HNF4 motif-containing MPRA enhancer 70 Neighboring gene apoptosis inducing factor mitochondria associated 2 Neighboring gene secretion associated Ras related GTPase 1A Neighboring gene calmodulin 2 pseudogene 2 Neighboring gene ribosomal protein S25 pseudogene 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Pol gag-pol HIV-1 Pol is identified to have a physical interaction with trypsin domain containing 1 (TYSND1) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed
integrase gag-pol HIV-1 IN is identified to have a physical interaction with trypsin domain containing 1 (TYSND1) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: AIFM2

Homology

Clone Names

  • FLJ40378, MGC34695, MGC131934

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protease binding IPI
Inferred from Physical Interaction
more info
PubMed 
serine-type endopeptidase activity EXP
Inferred from Experiment
more info
PubMed 
serine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serine-type endopeptidase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
protein homooligomerization IDA
Inferred from Direct Assay
more info
PubMed 
protein processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein processing TAS
Traceable Author Statement
more info
 
protein targeting to peroxisome TAS
Traceable Author Statement
more info
 
proteolysis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of fatty acid beta-oxidation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of fatty acid beta-oxidation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytosol TAS
Traceable Author Statement
more info
 
membrane HDA PubMed 
peroxisomal matrix TAS
Traceable Author Statement
more info
 
peroxisome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peroxisome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
peroxisomal leader peptide-processing protease
Names
peroxisomal cysteine endopeptidase
trypsin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040273.3NP_001035363.1  peroxisomal leader peptide-processing protease isoform b

    See identical proteins and their annotated locations for NP_001035363.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks two alternate exons in the coding region, which results in a frameshift, compared to variant 1. The encoded isoform (b) is shorter and has a distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AL731540, BC030242, BC042629, BC047424, BC111501
    Consensus CDS
    CCDS31214.1
    UniProtKB/Swiss-Prot
    Q2T9J0
    Related
    ENSP00000335673.5, ENST00000335494.5
    Conserved Domains (1) summary
    cl21584
    Location:185278
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
  2. NM_173555.4NP_775826.2  peroxisomal leader peptide-processing protease isoform a

    See identical proteins and their annotated locations for NP_775826.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
    Source sequence(s)
    AL731540, BC030242, BC042629, BC047424, BC111501
    Consensus CDS
    CCDS31213.1
    UniProtKB/Swiss-Prot
    Q2T9J0
    Related
    ENSP00000287078.6, ENST00000287078.7
    Conserved Domains (3) summary
    pfam00089
    Location:346526
    Trypsin; Trypsin
    pfam13365
    Location:357496
    Trypsin_2; Trypsin-like peptidase domain
    cl21584
    Location:185278
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

RNA

  1. NR_073580.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' exon and lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AL731540, BC047424
  2. NR_073581.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1.
    Source sequence(s)
    AK074968, AL731540, BC047424, HY013216
    Related
    ENST00000479086.1
  3. NR_073582.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 5' exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AL731540, BC030242, BC047424, DA434127
  4. NR_073591.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) differs in the 5' exon and uses an alternate splice site at an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AL731540, BC030242, BC047424, BI829894
  5. NR_073592.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) differs in the 5' exon and lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1.
    Source sequence(s)
    AL731540, BC030242, HY013216
  6. NR_073593.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) differs in the 5' exon and uses an alternate splice site at an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AL731540, BC030242, BC047424, CD671353
  7. NR_073594.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) differs in the 5' exon and uses an alternate splice site at an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1.
    Source sequence(s)
    AL731540, BC030242, BC047424, DA334145
  8. NR_073595.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) has an alternate 5' exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
    Source sequence(s)
    AL731540, BC030242, CV805418
    Related
    ENST00000494143.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    70137981..70146740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center