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PLAC9 placenta associated 9 [ Homo sapiens (human) ]

Gene ID: 219348, updated on 18-Aug-2020

Summary

Official Symbol
PLAC9provided by HGNC
Official Full Name
placenta associated 9provided by HGNC
Primary source
HGNC:HGNC:19255
See related
Ensembl:ENSG00000189129 MIM:612857
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 55.2), prostate (RPKM 10.1) and 10 other tissues See more
Orthologs

Genomic context

See PLAC9 in Genome Data Viewer
Location:
10q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (80131661..80145359)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (81892258..81904784)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene TMEM254 antisense RNA 1 Neighboring gene transmembrane protein 254 Neighboring gene ribosomal protein L22 pseudogene 18 Neighboring gene annexin A11 Neighboring gene long intergenic non-protein coding RNA 857 Neighboring gene ribosomal protein S12 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC104710

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
placenta-specific protein 9
Names
placenta specific 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012973.3NP_001012991.1  placenta-specific protein 9 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001012991.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL356095
    Consensus CDS
    CCDS31232.1
    UniProtKB/Swiss-Prot
    Q5JTB6
    Related
    ENSP00000361337.3, ENST00000372263.4
    Conserved Domains (1) summary
    pfam15205
    Location:2396
    PLAC9; Placenta-specific protein 9
  2. NM_001331125.2NP_001318054.1  placenta-specific protein 9 isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AA460691, AL356095, BC066348, BU731023
    Consensus CDS
    CCDS86126.1
    UniProtKB/Swiss-Prot
    Q5JTB6
    UniProtKB/TrEMBL
    Q5JTB5
    Related
    ENSP00000361341.2, ENST00000372267.6

RNA

  1. NR_138551.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' end compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    AL356095, BU731023, EL950785

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    80131661..80145359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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