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Eddm3b epididymal protein 3B [ Mus musculus (house mouse) ]

Gene ID: 219026, updated on 9-May-2024

Summary

Official Symbol
Eddm3bprovided by MGI
Official Full Name
epididymal protein 3Bprovided by MGI
Primary source
MGI:MGI:2684921
See related
Ensembl:ENSMUSG00000072575 AllianceGenome:MGI:2684921
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm75; Fam12
Summary
Is expressed in olfactory cortex ventricular layer and telencephalon ventricular layer. Orthologous to several human genes including EDDM3B (epididymal protein 3B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward genital fat pad adult (RPKM 65.1) See more
Orthologs
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Genomic context

Location:
14 C1; 14 26.38 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (51351886..51355248)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (51114429..51117791)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3111 Neighboring gene nuclear encoded tRNA proline 5 (anticodon TGG) Neighboring gene ribonuclease, RNase A family 4 Neighboring gene angiogenin, ribonuclease, RNase A family, 5 Neighboring gene STARR-positive B cell enhancer ABC_E4108 Neighboring gene ribonuclease, RNase A family, 6 Neighboring gene STARR-positive B cell enhancer ABC_E9895 Neighboring gene ribonuclease, RNase A family, 1 (pancreatic)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2)  1 citation
  • Targeted (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
epididymal secretory protein E3-beta
Names
epididymal secretory protein 3
family with sequence similarity 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203508.2NP_987104.1  epididymal secretory protein E3-beta precursor

    See identical proteins and their annotated locations for NP_987104.1

    Status: VALIDATED

    Source sequence(s)
    AC163664
    Consensus CDS
    CCDS27036.1
    UniProtKB/TrEMBL
    Q8K0E4, W0UTF6
    Related
    ENSMUSP00000098210.4, ENSMUST00000100645.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    51351886..51355248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)