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Sntn sentan, cilia apical structure protein [ Mus musculus (house mouse) ]

Gene ID: 218739, updated on 8-Dec-2022

Summary

Official Symbol
Sntnprovided by MGI
Official Full Name
sentan, cilia apical structure proteinprovided by MGI
Primary source
MGI:MGI:3045373
See related
Ensembl:ENSMUSG00000044772 AllianceGenome:MGI:3045373
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A430083B19Rik
Summary
Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Located in cilium. Is expressed in lung epithelium and nasal cavity respiratory epithelium. Orthologous to human SNTN (sentan, cilia apical structure protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lung adult (RPKM 2.7), ovary adult (RPKM 1.1) and 2 other tissues See more
Orthologs
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Genomic context

See Sntn in Genome Data Viewer
Location:
14; 14 A1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (8786615..8798887, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (13670876..13683148)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L19, pseudogene 4 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene synaptoporin Neighboring gene predicted gene 5087

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables transition metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177624.3NP_808292.1  sentan

    See identical proteins and their annotated locations for NP_808292.1

    Status: PROVISIONAL

    Source sequence(s)
    AK040281
    Consensus CDS
    CCDS26822.1
    UniProtKB/Swiss-Prot
    B7FF66, Q8C9X1
    UniProtKB/TrEMBL
    A0A8C6H699
    Related
    ENSMUSP00000062092.3, ENSMUST00000061045.3
    Conserved Domains (2) summary
    cd00213
    Location:54137
    S-100; S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 ...
    pfam13499
    Location:74127
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    8786615..8798887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)